Bioconductor GOslim

Showing : GOslim • reset

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GO.db GOslim

14 months ago amanda • 0

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2.3k

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gseabase go gene ontology goslim

4.9 years ago • updated 22 months ago samwhite ▴ 20

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4.3k

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go GSEABase GOslim gene ontology

4.9 years ago • updated 22 months ago samwhite ▴ 20

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1.9k

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GSEA GO goSlim

7.4 years ago • updated 7.3 years ago maeva.mollion • 0

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1.5k

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biomaRt goslim go

updated 8.2 years ago by Mike Smith ★ 6.6k • written 8.2 years ago by rubi ▴ 110

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gene ontology goslim enrichment analysis gene annotation

8.8 years ago mirko • 0

6 results • Page 1 of 1

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Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing by delhirussianescortscom • 0

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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