Biostar GOslim

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439

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gseabase go gene ontology goslim

updated 2.5 years ago by Robert Castelo ★ 2.9k • written 2.5 years ago by samwhite ▴ 20

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841

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go GSEABase GOslim gene ontology

updated 2.5 years ago by Martin Morgan 25k • written 2.5 years ago by samwhite ▴ 20

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937

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GSEA GO goSlim

4.9 years ago maeva.mollion • 0

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890

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biomaRt goslim go

updated 5.8 years ago by Mike Smith ★ 5.7k • written 5.8 years ago by rubi ▴ 100

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886

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gene ontology goslim enrichment analysis gene annotation

6.3 years ago mirko • 0

5 results • Page 1 of 1

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Answer: Conversion of UniProt to Ensembl by James W. MacDonald 60k

I will provide an example below. But first, there is a vignette for biomaRt (actually two), and it has extensive examples of how to use the…

Comment: the difference between getGEO and getGEOSuppFiles by Fatemeh • 0

thank you!

Answer: the difference between getGEO and getGEOSuppFiles by James W. MacDonald 60k

When submitting data to GEO, you are supposed to provide both the raw data and a matrix of processed data. When you use `getGEO` you get th…

Comment: error running UniProt.ws by James W. MacDonald 60k

https://www.bioconductor.org/checkResults/3.15/bioc-LATEST/UniProt.ws/nebbiolo1-install.html

Comment: error running UniProt.ws by James W. MacDonald 60k

@marcelramos You have introduced a dependency on `BiocBaseUtils`, but that package is only available in devel.

Votes

Answer: the difference between getGEO and getGEOSuppFiles

Answer: TPM normalization starting with read counts

DEseq2 time-series design.

A: Importance of Order in Design Formula

Awards • All

Scholar to James W. MacDonald 60k

Popular Question to Matthew Ritchie ▴ 1000

Scholar to Thomas Carroll ▴ 410