Bioconductor GSA

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1.7k

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limma GSA confounding within-pair analysis 450k

9.1 years ago Aileen Bahl ▴ 10

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1.7k

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gsea gsa

updated 8.1 years ago by Axel Klenk ★ 1.0k • written 8.1 years ago by Bogdan ▴ 670

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crlmm gsa microarray illumina

written 6.0 years ago by shaun • 0

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GSEA GSA

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by Bogdan ▴ 670

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gsea concept gsa

updated 7.3 years ago by Pekka Kohonen ▴ 190 • written 7.3 years ago by Lluís Revilla Sancho ▴ 730

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602

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GSEA GSA vst

updated 16 months ago by Michael Love 42k • written 16 months ago by nhaus ▴ 30

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GSA

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by epercamh • 0

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746

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GSA

6.2 years ago Seymoo • 0

8 results • Page 1 of 1

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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