Bioconductor GSEA

Showing : GSEA • reset

votes

replies

372

views

fgsea gsea

8 weeks ago • updated 6 weeks ago Gordon • 0

votes

232

views

clusterProfiler annotation gseGO gsea OrgDb

updated 7 weeks ago by Guido Hooiveld ★ 4.0k • written 8 weeks ago by enee ▴ 10

votes

replies

257

views

msigdb gmt GSEA

written 8 weeks ago by Georg • 0

votes

657

views

gsea DESeq2

updated 7 months ago by ATpoint ★ 4.1k • written 7 months ago by Grace.Ciabattoni • 0

votes

replies

1.4k

views

enrichplot GSEA clusterProfiler

updated 6 months ago by Fatemeh • 0 • written 9 months ago by Cen • 0

votes

replies

640

views

GSEA fgsea

10 months ago Cen • 0

vote

1.0k

views

GSEA voom limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

votes

replies

6.8k

views

GSEA GeneSetEnrichment DifferentialExpression

updated 3 months ago by ATpoint ★ 4.1k • written 2.2 years ago by nhaus ▴ 30

votes

replies

1.7k

views

EGSEA gene set testing vooma limma voom gsea

updated 10 days ago by Chris ▴ 10 • written 7.4 years ago by Pekka Kohonen ▴ 190

9 results • Page 1 of 1

Recent ...

Replies

Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Awards • All

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180