Bioconductor GSEA

Showing : GSEA • reset

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359

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fgsea gsea

6 weeks ago • updated 4 weeks ago Gordon • 0

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213

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clusterProfiler annotation gseGO gsea OrgDb

updated 6 weeks ago by Guido Hooiveld ★ 3.9k • written 6 weeks ago by enee ▴ 10

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235

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msigdb gmt GSEA

written 7 weeks ago by Georg • 0

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608

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gsea DESeq2

updated 6 months ago by ATpoint ★ 4.1k • written 6 months ago by Grace.Ciabattoni • 0

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1.3k

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enrichplot GSEA clusterProfiler

updated 6 months ago by Fatemeh • 0 • written 9 months ago by Cen • 0

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622

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GSEA fgsea

9 months ago Cen • 0

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986

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GSEA voom limma

updated 9 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

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6.6k

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GSEA GeneSetEnrichment DifferentialExpression

updated 3 months ago by ATpoint ★ 4.1k • written 2.1 years ago by nhaus ▴ 30

8 results • Page 1 of 1

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k