Bioconductor GSEa

Showing : GSEa • reset

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6.6k

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GSEA GeneSetEnrichment DifferentialExpression

updated 3 months ago by ATpoint ★ 4.1k • written 2.2 years ago by nhaus ▴ 30

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1.7k

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EGSEA gene set testing vooma limma voom gsea

updated 3 hours ago by Chris • 0 • written 7.3 years ago by Pekka Kohonen ▴ 190

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239

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msigdb gmt GSEA

written 7 weeks ago by Georg • 0

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1.3k

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enrichplot GSEA clusterProfiler

updated 6 months ago by Fatemeh • 0 • written 9 months ago by Cen • 0

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360

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fgsea gsea

6 weeks ago • updated 5 weeks ago Gordon • 0

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990

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GSEA voom limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

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617

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gsea DESeq2

updated 6 months ago by ATpoint ★ 4.1k • written 6 months ago by Grace.Ciabattoni • 0

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217

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clusterProfiler annotation gseGO gsea OrgDb

updated 6 weeks ago by Guido Hooiveld ★ 3.9k • written 6 weeks ago by enee ▴ 10

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626

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GSEA fgsea

9 months ago Cen • 0

9 results • Page 1 of 1

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Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0

Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

Comment: deseq2 results by swbarnes2 ★ 1.3k

Cross-posted https://www.biostars.org/p/9594331/#9594458

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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Teacher to Michael Love 42k