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GenVisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
19 months ago
Amy_
• 0
3
votes
10
replies
2.8k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 5 months ago by
zlskidmore
▴ 30 • written 21 months ago by
abhisikta
• 0
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 23 months ago by
Hervé Pagès
16k • written 23 months ago by
Michel
• 0
0
votes
0
replies
1.6k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
23 months ago
e
• 0
0
votes
1
reply
1.0k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 3.5 years ago by
zlskidmore
▴ 30 • written 3.5 years ago by
Jeni
▴ 10
0
votes
1
reply
703
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
4.5 years ago
sheneicechang
• 0
0
votes
0
replies
910
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
4.6 years ago
sheneicechang
• 0
0
votes
1
reply
1.1k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 5.4 years ago by
zlskidmore
▴ 30 • written 5.5 years ago by
ZihaoXing
• 0
0
votes
1
reply
826
views
Issues with lohSpec
genvisr
lohSpec
5.8 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.1k
views
Copy Number plot cnSpec - how to order samples
genvisr
5.9 years ago
cedric.vmdl
• 0
0
votes
4
replies
1.9k
views
GenVisR- cnSpec CNV plot
GenVisR
6.3 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.2k
views
an error in TvTi: package GenVisR
GenVisR
updated 7.2 years ago by
zlskidmore
▴ 30 • written 7.2 years ago by
Bogdan
▴ 670
2
votes
5
replies
2.7k
views
GenVisR Installation error message
genvisR
8.2 years ago
Deep Adhya
▴ 20
13 results • Page
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Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Votes
Print Differentially Expressed Exons From Dexseq Results
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
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