Bioconductor HTSeqCounts

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deseq2 deseq edgeR rnaseq htseqcounts

6.9 years ago Deepali • 0

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2.1k

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edger htseqcounts

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by Bioinformatics ▴ 30

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R summarizeoverlaps htseqcounts

updated 7.2 years ago by thokall ▴ 160 • written 7.2 years ago by Walter F. Baumann ▴ 10

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4.8k

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htseqcounts edger

updated 2.3 years ago by Randy • 0 • written 7.4 years ago by mictadlo ▴ 10

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3.6k

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edger htseqcounts

updated 7.4 years ago by Gordon Smyth 52k • written 7.4 years ago by mictadlo ▴ 10

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1.3k

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htseqcounts star rnaseq

7.4 years ago Ahdee ▴ 50

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featurecounts SAM htseqcounts

updated 18 months ago by Yang Liao ▴ 450 • written 7.7 years ago by courtney.stairs • 0

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3.9k

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chipseq deseq2 htseqcounts

updated 22 months ago by mhashan.j ▴ 10 • written 7.9 years ago by JunLVI ▴ 40

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edger htseqcounts rnaseq

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by romsdahl • 0

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dexseq_count dexseq htseqcounts

8.3 years ago as1023 • 0

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deseq2 pca tximportdata htseqcounts

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by Ben Mansfeld • 0

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by sakura.nussbaum ▴ 10

13 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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