Bioconductor HTSeqCounts

Showing : HTSeqCounts • reset

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deseq2 deseq edgeR rnaseq htseqcounts

6.7 years ago Deepali • 0

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2.1k

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edger htseqcounts

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by Bioinformatics ▴ 30

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R summarizeoverlaps htseqcounts

updated 7.0 years ago by thokall ▴ 160 • written 7.0 years ago by Walter F. Baumann ▴ 10

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htseqcounts edger

updated 2.1 years ago by Randy • 0 • written 7.2 years ago by mictadlo ▴ 10

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3.5k

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edger htseqcounts

updated 7.2 years ago by Gordon Smyth 51k • written 7.2 years ago by mictadlo ▴ 10

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1.3k

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htseqcounts star rnaseq

7.2 years ago Ahdee ▴ 50

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featurecounts SAM htseqcounts

updated 16 months ago by Yang Liao ▴ 450 • written 7.5 years ago by courtney.stairs • 0

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3.8k

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chipseq deseq2 htseqcounts

updated 20 months ago by mhashan.j ▴ 10 • written 7.7 years ago by JunLVI ▴ 40

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edger htseqcounts rnaseq

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by romsdahl • 0

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1.2k

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dexseq_count dexseq htseqcounts

8.2 years ago as1023 • 0

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1.9k

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deseq2 pca tximportdata htseqcounts

updated 8.3 years ago by Michael Love 42k • written 8.3 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 8.4 years ago by Gordon Smyth 51k • written 8.4 years ago by Ben Mansfeld • 0

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by sakura.nussbaum ▴ 10

13 results • Page 1 of 1

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Comment: Volcano plot has many values around zero by Michael Love 42k

It's positive over zero or nearly so.

Answer: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.

Comment: Volcano plot has many values around zero by mjun • 0

Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks

Comment: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…

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Comment: Weird looking volcano plot

Volcano plot has many values around zero

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

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Popular Question to Dario Strbenac ★ 1.5k

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k