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HTSeqCounts
•
reset
1
vote
2
replies
4.3k
views
Length of 'group' must equal number of columns in 'counts'
htseqcounts
edger
updated 19 months ago by
Randy
• 0 • written 6.7 years ago by
mictadlo
▴ 10
2
votes
4
replies
3.4k
views
Error in DESeqDataSetFromHTSeqCount: Gene IDs (first column) differ between files.
chipseq
deseq2
htseqcounts
updated 14 months ago by
mhashan.j
▴ 10 • written 7.2 years ago by
JunLVI
▴ 40
3
votes
7
replies
3.3k
views
read counts for each gene for edgeR
edger
htseqcounts
updated 6.7 years ago by
Gordon Smyth
50k • written 6.7 years ago by
mictadlo
▴ 10
0
votes
5
replies
2.3k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 10 months ago by
Yang Liao
▴ 380 • written 7.0 years ago by
courtney.stairs
• 0
1
vote
1
reply
2.0k
views
Difference between SummarizeOverlaps and HTSeq
R
summarizeoverlaps
htseqcounts
updated 6.5 years ago by
thokall
▴ 160 • written 6.5 years ago by
Walter F. Baumann
▴ 10
1
vote
6
replies
1.9k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
sakura.nussbaum
▴ 10
0
votes
3
replies
1.9k
views
how to read htseq-count
edger
htseqcounts
updated 6.3 years ago by
Gordon Smyth
50k • written 6.3 years ago by
Bioinformatics
▴ 30
1
vote
4
replies
1.7k
views
GOSeq: analysis of unsupported genome after HTseq and DEseq2 - building gene lengths, comparing contrasts and understanding results.
deseq2
goseq
htseqcounts
rnaseq
plant
updated 7.9 years ago by
Gordon Smyth
50k • written 7.9 years ago by
Ben Mansfeld
• 0
0
votes
7
replies
1.7k
views
PCA results different from th same sample but different counting method
deseq2
pca
tximportdata
htseqcounts
updated 7.8 years ago by
Michael Love
42k • written 7.8 years ago by
jarod_v6@libero.it
▴ 40
0
votes
4
replies
1.3k
views
Normalise counts when tumour samples have normal tissue contamination.
deseq2
deseq
edgeR
rnaseq
htseqcounts
6.2 years ago
Deepali
• 0
2
votes
2
replies
1.1k
views
Why does total unique map not equal to library size?
htseqcounts
star
rnaseq
6.7 years ago
Ahdee
▴ 50
1
vote
1
reply
1.1k
views
RNA-seq: EdgeR's togtags table not correlating to htseq-count's CPM values
edger
htseqcounts
rnaseq
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
romsdahl
• 0
0
votes
0
replies
1.1k
views
DEXSeq error: erro in dexseq_count.py
dexseq_count
dexseq
htseqcounts
7.6 years ago
as1023
• 0
13 results • Page
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Recent ...
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Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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