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HTqPCR
•
reset
3
votes
4
replies
3.0k
views
Using limma for the analysis of qPCR data
NormqPCR
EasyqpcR
qPCR
HTqPCR
limma
updated 2.5 years ago by
Ming
▴ 380 • written 3.3 years ago by
enricoferrero
▴ 660
0
votes
4
replies
2.4k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR
HTqPCR
qPCR
HTqPCR
updated 13.9 years ago by
Heidi Dvinge
★ 2.0k • written 13.9 years ago by
V. Oostra
▴ 30
0
votes
6
replies
2.2k
views
HTqPCR
qPCR
GO
GLAD
HTqPCR
qPCR
GO
GLAD
HTqPCR
updated 11.9 years ago by
Heidi Dvinge
★ 2.0k • written 11.9 years ago by
Heidi Dvinge
▴ 40
0
votes
7
replies
2.1k
views
readCtData() in HTqPCR with matrix of multiple samples
HTqPCR
HTqPCR
updated 13.1 years ago by
Heidi Dvinge
★ 2.0k • written 13.1 years ago by
Andrew Yee
▴ 350
3
votes
7
replies
2.1k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
7.3 years ago
henrik.seidel
▴ 40
0
votes
0
replies
2.1k
views
reading qRT-PCR data
ddCt
HTqPCR
ReadqPCR
ddCt
HTqPCR
ReadqPCR
10.0 years ago
Guest User
★ 13k
0
votes
2
replies
2.0k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
HTqPCR
updated 14.3 years ago by
Heidi Dvinge
★ 2.0k • written 14.3 years ago by
Adam Kiezun
▴ 50
0
votes
2
replies
2.0k
views
HTqPCR problem with creation of qPCRset
qPCR
HTqPCR
qPCR
HTqPCR
updated 11.2 years ago by
James W. MacDonald
65k • written 11.2 years ago by
Elisabeth Gilis
▴ 20
1
vote
0
replies
2.0k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR
readCtData
Heidi Dvinge
8.0 years ago
virginia.claudio
▴ 10
0
votes
2
replies
1.9k
views
reading in data in ReadqPCR
qPCR
Annotation
HTqPCR
qPCR
Annotation
HTqPCR
11.2 years ago
Guest User
★ 13k
0
votes
1
reply
1.8k
views
Problems creating a qPCRset object in "HTqPCR"
HTqPCR
HTqPCR
12.9 years ago
Peter Davidsen
▴ 210
0
votes
0
replies
1.8k
views
HTqPCR R Bioconductor question (problem reading SDS files for qPCR) (Alexander Williams)
qPCR
HTqPCR
qPCR
HTqPCR
13.3 years ago
Alexander Williams
▴ 20
0
votes
1
reply
1.8k
views
Problem with function limmaCtData in HTqPCR package: "leading minor of order 2 is not positive definite"
HTqPCR
HTqPCR
updated 13.8 years ago by
Heidi Dvinge
★ 2.0k • written 13.8 years ago by
Bass, Kevin
▴ 10
1
vote
7
replies
1.7k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma
ndups
htqpcr
software error
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
julio.c.silver
• 0
0
votes
5
replies
1.7k
views
HTqPCR: new qPCRset objects problem
HTqPCR
HTqPCR
updated 13.2 years ago by
Heidi Dvinge
★ 2.0k • written 13.2 years ago by
Wenbo Mu
▴ 30
0
votes
1
reply
1.6k
views
Using HTqPCR for Fluidigm BioMark input data (48.48 array)
Clustering
HTqPCR
Clustering
HTqPCR
updated 11.5 years ago by
Fletez-Brant, Christopher NIH/VRC [C]
▴ 60 • written 11.5 years ago by
Jens Durruthy-Durruthy
▴ 10
0
votes
0
replies
1.6k
views
FW: Using HTqPCR for Fluidigm BioMark input data (48.48 array)
Clustering
HTqPCR
Clustering
HTqPCR
11.5 years ago
Fletez-Brant, Christopher NIH/VRC [C]
▴ 60
0
votes
0
replies
1.6k
views
HTqPCR
qPCR
limma
ddCt
HTqPCR
qPCR
limma
ddCt
HTqPCR
11.6 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.6k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray
qPCR
HTqPCR
a4
Microarray
qPCR
HTqPCR
a4
11.2 years ago
b1gorsuch@comcast.net
▴ 20
0
votes
8
replies
1.5k
views
HTqPCR problems
HTqPCR
HTqPCR
updated 11.9 years ago by
Heidi Dvinge
★ 2.0k • written 11.9 years ago by
Simon Melov
▴ 340
0
votes
5
replies
1.5k
views
Reading in mutiple files using readCtData
HTqPCR
HTqPCR
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Norm Allaire
▴ 50
0
votes
0
replies
1.5k
views
Problems importing (new) LightCycler data to HTqPCR
htqpcr
dataimport
9.0 years ago
H.H.
• 0
0
votes
0
replies
1.5k
views
HTqPCR R Bioconductor question (problem reading SDS files for qPCR)
qPCR
HTqPCR
qPCR
HTqPCR
13.3 years ago
Alexander Williams
▴ 20
0
votes
2
replies
1.5k
views
Compatibility of Biorad cfx files to HTqPCR?
qPCR
HTqPCR
qPCR
HTqPCR
updated 13.1 years ago by
Heidi Dvinge
★ 2.0k • written 13.1 years ago by
TP Sahoo
▴ 10
0
votes
2
replies
1.5k
views
HTqPCR : readCtData problem?
miRNA
qPCR
HTqPCR
miRNA
qPCR
HTqPCR
13.5 years ago
Heidi Dvinge
★ 2.0k
0
votes
4
replies
1.5k
views
Reading in data with HTqPCR
qPCR
Cancer
cycle
HTqPCR
qPCR
Cancer
cycle
HTqPCR
13.9 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.5k
views
HTqPCR question
HTqPCR
HTqPCR
updated 13.4 years ago by
Heidi Dvinge
★ 2.0k • written 13.4 years ago by
Simon Melov
▴ 340
0
votes
1
reply
1.4k
views
TLDA data
Clustering
Cancer
PROcess
cycle
HTqPCR
Clustering
Cancer
PROcess
cycle
HTqPCR
updated 13.9 years ago by
Heidi Dvinge
★ 2.0k • written 13.9 years ago by
deepak roshan
▴ 40
0
votes
4
replies
1.4k
views
HTqPCR problems
qPCR
GO
Preprocessing
GLAD
HTqPCR
qPCR
GO
Preprocessing
GLAD
HTqPCR
updated 11.8 years ago by
Simon Melov
▴ 340 • written 11.8 years ago by
Heidi Dvinge
★ 2.0k
3
votes
1
reply
1.4k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 7.3 years ago by
henrik.seidel
▴ 40 • written 7.5 years ago by
julius
▴ 20
0
votes
4
replies
1.4k
views
HTqPCR normalization issues - third posting
Normalization
HTqPCR
Normalization
HTqPCR
updated 10.5 years ago by
Levi Waldron
★ 1.1k • written 10.5 years ago by
alessandro.guffanti@genomnia.com
▴ 330
0
votes
1
reply
1.4k
views
HTqPCR problem with replicates
ddCt
HTqPCR
ddCt
HTqPCR
updated 12.3 years ago by
Heidi Dvinge
★ 2.0k • written 12.3 years ago by
marco fabbri
▴ 320
0
votes
1
reply
1.4k
views
Possible bug in setCategory function from HTqPCR package
htqpcr
HTqPCR
updated 7.6 years ago by
h.roest
• 0 • written 9.4 years ago by
Matthew McCall
▴ 830
0
votes
1
reply
1.4k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
a4
HTqPCR
a4
updated 14.2 years ago by
Heidi Dvinge
★ 2.0k • written 14.2 years ago by
marco fabbri
▴ 320
1
vote
1
reply
1.3k
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 3.3 years ago by
Gordon Smyth
50k • written 8.4 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
1.3k
views
structure of cfx file for HTqPCR
Microarray
qPCR
cycle
HTqPCR
Microarray
qPCR
cycle
HTqPCR
11.2 years ago
Guest User
★ 13k
0
votes
5
replies
1.3k
views
HTqPCR normalization issues - third posting
Normalization
HTqPCR
Normalization
HTqPCR
updated 10.6 years ago by
James W. MacDonald
65k • written 10.6 years ago by
Guest User
★ 13k
0
votes
2
replies
1.3k
views
HTqPCR
HTqPCR
HTqPCR
updated 12.0 years ago by
Heidi Dvinge
★ 2.0k • written 12.0 years ago by
wenhuo hu
▴ 200
2
votes
1
reply
1.3k
views
HTqPCR- gene names not maintained in limmaCtData
annotate
ddCt
HTqPCR
annotate
ddCt
HTqPCR
10.2 years ago
Cornwell, Adam
▴ 110
1
vote
2
replies
1.3k
views
No differential expression with limmaCtData possible
limma
htqpcr
6.5 years ago • updated 6.4 years ago
h.roest
• 0
0
votes
3
replies
1.3k
views
HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 7.2 years ago by
hdvinge
• 0 • written 7.3 years ago by
henrik.seidel
▴ 40
0
votes
1
reply
1.2k
views
HTqPCR: bug in subsetting qPCRset
HTqPCR
htqpcr
subsetting
updated 7.3 years ago by
henrik.seidel
▴ 40 • written 7.5 years ago by
Guido Hooiveld
★ 3.9k
0
votes
0
replies
1.2k
views
doubt in HTqPCR
Cancer
ddCt
cycle
HTqPCR
ASSIGN
Cancer
ddCt
cycle
HTqPCR
ASSIGN
12.6 years ago
Heidi Dvinge
★ 2.0k
0
votes
2
replies
1.2k
views
HTqPCR + setting flags as unreliable problem
htqpcr
flags
setCategory
9.4 years ago
samantha.smith-4
• 0
0
votes
2
replies
1.2k
views
HTqPCR - limmaCtData using samples with different number of replicates?
HTqPCR
HTqPCR
updated 11.9 years ago by
Heidi Dvinge
★ 2.0k • written 11.9 years ago by
Fletez-Brant, Christopher NIH/VRC [C]
▴ 60
0
votes
0
replies
1.2k
views
HTqPCR: qPCRset
Annotation
HTqPCR
Annotation
HTqPCR
11.2 years ago
Guest User
★ 13k
0
votes
4
replies
1.2k
views
HTqPCR questions
qPCR
HTqPCR
qPCR
HTqPCR
updated 13.3 years ago by
alessandro.guffanti@genomnia.com
▴ 330 • written 13.3 years ago by
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.2k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA
microRNA
HTqPCR
miRNA
microRNA
HTqPCR
updated 12.7 years ago by
Heidi Dvinge
★ 2.0k • written 12.7 years ago by
Guido Hooiveld
★ 3.9k
0
votes
3
replies
1.2k
views
HTqPCR plotting groups of interest
HTqPCR
HTqPCR
updated 11.8 years ago by
Heidi Dvinge
★ 2.0k • written 11.8 years ago by
Simon Melov
▴ 340
0
votes
1
reply
1.2k
views
featureNames converted to numbers in limmaCtData
limma
htqpcr
8.7 years ago
julio.c.silver
• 0
50 results • Page
1 of 1
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Replies
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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