Bioconductor InteractionSet

Showing : InteractionSet • reset

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1.3k

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interactionset granges

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Vinicius Henrique da Silva ▴ 40

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1.2k

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diffhic hic interactionset contactmatrix inflate

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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1.0k

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InteractionSet structural variants

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by tangming2005 ▴ 190

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1.3k

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diffhic interactionset

7.7 years ago Vivek.b ▴ 100

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1.0k

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DEGcomparison DESeq2 InteractionSet pvalue

9 weeks ago • updated 8 weeks ago paria.alipour • 0

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401

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InteractionSet subsetByOverlaps GenomicInteractions

9 months ago LaureTomas ▴ 10

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646

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InteractionSet GInteractions

3 months ago Sarah ▴ 10

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1.2k

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genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

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826

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diffHic HiC InteractionSet

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by girardot • 0

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834

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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998

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InteractionSet

2.8 years ago noag • 0

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760

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InteractionSet BuildReport

15 months ago martin.grigorov ▴ 10

12 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length