Bioconductor IsoformSwitchAnalyzeR

Showing : IsoformSwitchAnalyzeR • reset

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1.7k

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AlternativeSplicing RNASeq IsoformSwitchAnalyzeR gtf

written 20 months ago by bpshtiwan ▴ 10

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1.2k

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isoformswitchanalyzer isoform differential isoform usage

written 5.4 years ago by A ▴ 40

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1.5k

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salmon IsoformSwitchAnalyzeR tximport RNASeqData

updated 9 months ago by k.vitting.seerup ▴ 120 • written 9 months ago by elva.gypsophila ▴ 10

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642

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IsoformSwitchAnalyzeR

10 months ago venura • 0

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434

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IsoformSwitchAnalyzeR

10 months ago Callum • 0

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106

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 14 days ago by Michael Love 41k • written 15 days ago by 09191919 • 0

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375

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Isoform IsoformSwitchAnalyzeR

11 months ago Craig • 0

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309

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IsoformSwitchAnalyzeR satuRn

7 months ago jbono ▴ 10

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154

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IsoformSwitchAnalyzeR

8 weeks ago Henry • 0

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1.4k

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dplyr IsoformSwitchAnalyzeR

written 12 months ago by ramon.dslps • 0

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280

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stringtie IsoformSwitchAnalyzeR pfamAnalyzeR gtf

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by sumitra.20 • 0

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2.2k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

12 results • Page 1 of 1

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Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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