Showing : Isoform • reset
6
votes
10
replies
3.9k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 14 months ago by ★ 5.0k • written 15 months ago by ▴ 10
0
votes
0
replies
834
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
2.8 years ago Craig • 0
0
votes
2
replies
1.2k
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio isoform
written 3.2 years ago by • 0
0
votes
5
replies
3.6k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData isoform DESeq2
3.9 years ago • updated 3.8 years ago priyanka.m • 0
0
votes
0
replies
2.1k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform RNA-seq hisat2 stringtie ballgown
5.4 years ago ra711 • 0
0
votes
5
replies
2.1k
views
isoform data, deep sequencing and voom
isoform deep sequencing voom
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 620
0
votes
4
replies
1.9k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport isoform voom
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 620
1
vote
4
replies
2.1k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 6.4 years ago by ▴ 120 • written 6.4 years ago by • 0
1
vote
4
replies
1.7k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 6.5 years ago by ★ 1.4k • written 6.5 years ago by • 0
1
vote
5
replies
2.1k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer isoform differential isoform usage
written 7.2 years ago by ▴ 60
0
votes
0
replies
1.3k
views
IsoformSwitchAnalyzeR error input
kallisto differential isoform usage isoform
8.3 years ago ilyco • 0
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Answer: bcftools norm Equivalent by a2a2hd42aa • 0
it lacks a direct, single function equivalent to bcftools norm for variant normalization. Bioinformaticians often bridge this gap by using …
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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