Bioconductor KEGG

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2.5k

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KEGG gometh

updated 11 months ago by Aung • 0 • written 13 months ago by pedro-marra ▴ 10

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1.1k

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KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db

updated 8 months ago by Guido Hooiveld ★ 3.9k • written 8 months ago by Milan ▴ 10

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205

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 10 days ago by Guido Hooiveld ★ 3.9k • written 13 days ago by fernanda.backsouza ▴ 10

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188

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Pathways clusterProfiler gseKEGG KEGG

20 days ago julia_mcdonough • 0

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257

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enrichKEGG KEGGgraph KEGG

updated 10 weeks ago by Guido Hooiveld ★ 3.9k • written 10 weeks ago by cinzia.spagnoli • 0

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KEGG clusterProfiler

updated 3 months ago by Guido Hooiveld ★ 3.9k • written 14 months ago by ruiqi.li ▴ 10

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104

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 9 days ago by James W. MacDonald 65k • written 9 days ago by fernanda.backsouza ▴ 10

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1.0k

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pathview KEGG Oryza_sativa

10 months ago Jiyoung Lee • 0

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1.8k

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clusterProfiler enrichment KEGG

updated 10 weeks ago by cinzia.spagnoli • 0 • written 23 months ago by AP • 0

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370

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clusterProfiler GenomicDistributionsData KEGG

11 days ago • updated 8 days ago fernanda.backsouza ▴ 10

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1.2k

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KEGG limma

written 13 months ago by andrewsm • 0

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1.4k

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KEGG GAGE NaN R DESeq2

updated 11 months ago by Rob • 0 • written 5.5 years ago by owen.donohoe • 0

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351

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axolotl KEGG GOstats clusterProfiler

9 months ago georgii.vdovin • 0

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353

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KEGGREST KEGG RNASeq

6 months ago mch • 0

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1.3k

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cluster clusterProfiler KEGG

12 months ago • updated 11 months ago ruba-mahmoud • 0

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561

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timecourse KEGG DESeq2

updated 11 months ago by Michael Love 41k • written 11 months ago by Fred • 0

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pathview kegg KEGG

updated 6 months ago by Benji Bromberg ▴ 20 • written 7 months ago by Mauricio Diego • 0

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1.5k

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kegg enrichkegg clusterprofiler

updated 5 months ago by EvaLan • 0 • written 5.8 years ago by bekah ▴ 40

18 results • Page 1 of 1

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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