Bioconductor KEGG

Showing : KEGG • reset

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3.1k

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clusterProfiler GenomicDistributionsData KEGG

12 months ago fernanda.backsouza ▴ 30

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1.7k

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Pathways clusterProfiler gseKEGG KEGG

written 12 months ago by julia_mcdonough • 0

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490

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 12 months ago by James W. MacDonald 68k • written 12 months ago by fernanda.backsouza ▴ 30

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588

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pathview Pathways KEGG

4 months ago Philippine • 0

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517

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metaboliteIDmapping Metabolomics KEGG

updated 7 months ago by deeenes ▴ 60 • written 7 months ago by vipinsapla • 0

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260

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clusterProfiler KEGG

10 weeks ago Jessica • 0

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401

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kegg.gsets gageData gage KEGG

9 months ago cereyredondo • 0

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591

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Salmo_salar RNASeq KEGG pathview

12 weeks ago • updated 9 weeks ago ingrid.h • 0

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2.7k

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pathview KEGG

written 3.9 years ago by curiousmind007 ▴ 10

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940

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KEGGgraph KEGG

updated 11 months ago by Guido Hooiveld ★ 4.1k • written 11 months ago by Fara • 0

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342

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GO KEGG gage pathview

11 months ago danalvoronov ▴ 10

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3.1k

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pathview kegg KEGG

updated 6 months ago by Evan • 0 • written 19 months ago by Mauricio Diego • 0

12 results • Page 1 of 1

Recent ...

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Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!

Votes

A: conceptual question about FDR, FDR adjusted p-value and q-value

Comment: edgeR::cpm() results in negative values from raw counts of 0

Answer: edgeR::cpm() results in negative values from raw counts of 0

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