Showing : Lipidomics • reset
0
votes
1
reply
461
views
DESeq use in lipidomic analysis
DESeq2 package Lipidomics
updated 9 months ago by 43k • written 9 months ago by • 0
0
votes
0
replies
374
views
Lipidomics Barplot: raw values or non-log, lipidr-normalized values?
Normalization Lipidomics lipidr
12 months ago David R ▴ 90
1
vote
0
replies
2.4k
views
Normalization of metabolomics/lipidomics data for limma
Lipidomics Metabolomics limma Normalization
4.4 years ago pgugger ▴ 70
0
votes
0
replies
811
views
when to use filter_by_cv() function from the lipidr package
Lipidomics lipidr lipi
5.0 years ago eme • 0
1
vote
0
replies
1.2k
views
Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics lipidomics clinical research data integration biostatistics Job
5.8 years ago Tommi Suvitaival ▴ 10
0
votes
0
replies
1.6k
views
Shotgun lipidomics analysis
shotgun lipidomics lipidomics mass spectrometry
9.9 years ago Titan • 0
1
vote
3
replies
3.1k
views
XCMS2 on MSMS data
xcms metabolomics massspectrometry lipidomics bioconductor
9.9 years ago Titan • 0
0
votes
3
replies
2.7k
views
Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
9.9 years ago Titan • 0
0
votes
4
replies
3.7k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
9.9 years ago Titan • 0
0
votes
0
replies
1.6k
views
Bioinformatics position available in lipidomics biomarker research
Lipidomics Lipidomics
16.1 years ago Michael Eiden ▴ 10
10 results • Page 1 of 1
Recent ...
Replies
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.2k
Locations • All
The city by the bay, 1 hour ago
United States, 1 hour ago
United States, 2 hours ago
WEHI, Melbourne, Australia, 2 hours ago
United States, 8 hours ago
Traffic: 4026 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6