Bioconductor Lipidomics

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506

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DESeq2 package Lipidomics

updated 11 months ago by Michael Love 43k • written 11 months ago by 泓宇 • 0

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431

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Normalization Lipidomics lipidr

14 months ago David R ▴ 90

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2.7k

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Lipidomics Metabolomics limma Normalization

4.6 years ago pgugger ▴ 70

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851

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Lipidomics lipidr lipi

5.2 years ago eme • 0

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1.3k

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metabolomics lipidomics clinical research data integration biostatistics Job

6.0 years ago Tommi Suvitaival ▴ 10

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1.7k

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shotgun lipidomics lipidomics mass spectrometry

10.1 years ago Titan • 0

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3.1k

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xcms metabolomics massspectrometry lipidomics bioconductor

10.1 years ago Titan • 0

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2.8k

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xcms metabolomics lipidomics proteomics massspectrometry

10.1 years ago Titan • 0

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3.8k

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xcms metabolomics lipidomics statistics

10.1 years ago Titan • 0

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1.7k

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Lipidomics Lipidomics

16.3 years ago Michael Eiden ▴ 10

10 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Popular Question to Peter Hickey ▴ 760