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MAPLOT
•
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0
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2
replies
2.0k
views
Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 3.0 years ago by
ATpoint
★ 5.0k • written 3.0 years ago by
Michael
• 0
10
votes
8
replies
3.7k
views
MA plot
MAplot
3.0 years ago
Nathalie
▴ 20
0
votes
3
replies
4.0k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
sp
• 0
1
vote
1
reply
1.2k
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
evelas13
• 0
1
vote
2
replies
965
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
rbronste
▴ 60
2
votes
2
replies
3.9k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 6.7 years ago by
Rory Stark
★ 5.3k • written 6.7 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.9k
views
MA plot scattering pattern
deseq2
MAplot
7.2 years ago
avitalwasser
• 0
5
votes
8
replies
1.8k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
rbronste
▴ 60
0
votes
4
replies
1.6k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
ma619
• 0
0
votes
1
reply
2.0k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 8.0 years ago by
Michael Love
43k • written 8.0 years ago by
phurbusang
• 0
2
votes
1
reply
2.8k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 8.0 years ago by
Michael Love
43k • written 8.0 years ago by
rbronste
▴ 60
2
votes
4
replies
2.4k
views
DiffBind MA plot
diffbind
maplot
updated 8.1 years ago by
Rory Stark
★ 5.3k • written 8.1 years ago by
grundelphine
• 0
1
vote
2
replies
1.8k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 8.3 years ago by
Rory Stark
★ 5.3k • written 8.3 years ago by
rbronste
▴ 60
0
votes
3
replies
3.2k
views
DESeq2 MA plot look different
deseq2
maplot
updated 8.3 years ago by
Michael Love
43k • written 8.3 years ago by
jshouse
▴ 10
3
votes
6
replies
2.7k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 9.5 years ago by
Gordon Smyth
53k • written 9.5 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.6k
views
error while running MAplot
MAplot
rnaseq
cummerbund
9.8 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Comment: NUPOP usage
by
Tikaaaq2c
• 0
To use the NuPoP application for nucleosome positioning prediction, you first need to provide a DNA sequence in FASTA format. If you are us…
Comment: Chip Seq Analysis of RNA Polymerase 2
by
Tikaaaq2c
• 0
Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
Tikaaaq2c
• 0
Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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