Bioconductor MAPLOT

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DESeq2 MAplot

updated 23 months ago by ATpoint ★ 4.6k • written 23 months ago by Michael • 0

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2.8k

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MAplot

23 months ago Nathalie ▴ 20

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3.2k

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DESeq2 MAplot deseq

updated 3.9 years ago by Michael Love 43k • written 3.9 years ago by sp • 0

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964

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deseq2 MAplot lfcshrink

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by evelas13 • 0

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748

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deseq2 maplot annotation

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by rbronste ▴ 60

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3.1k

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diffbind R MAplot Chipseq

updated 5.6 years ago by Rory Stark ★ 5.2k • written 5.6 years ago by melnuesch ▴ 10

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1.6k

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deseq2 MAplot

6.1 years ago avitalwasser • 0

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1.5k

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deseq2 maplot

updated 6.2 years ago by James W. MacDonald 67k • written 6.2 years ago by rbronste ▴ 60

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1.3k

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deseq2 normalization maplot rnaseq

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by ma619 • 0

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1.7k

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MAPLOT DESEQ2 RNASEQ

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by phurbusang • 0

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2.4k

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deseq2 maplot subset

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by rbronste ▴ 60

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1.9k

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diffbind maplot

updated 7.0 years ago by Rory Stark ★ 5.2k • written 7.0 years ago by grundelphine • 0

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1.4k

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diffbind deseq2 maplot

updated 7.3 years ago by Rory Stark ★ 5.2k • written 7.3 years ago by rbronste ▴ 60

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2.9k

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deseq2 maplot

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by jshouse ▴ 10

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2.1k

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edgeR MAplot rnaseq differential gene expression

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by joseph.bergenstrahle • 0

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1.4k

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MAplot rnaseq cummerbund

8.8 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

A: Linear regression in DESeq2

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

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