Bioconductor MAPLOT

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1.4k

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DESeq2 MAplot

updated 21 months ago by ATpoint ★ 4.5k • written 21 months ago by Michael • 0

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2.7k

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MAplot

22 months ago Nathalie ▴ 20

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3.1k

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DESeq2 MAplot deseq

updated 3.7 years ago by Michael Love 43k • written 3.7 years ago by sp • 0

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939

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deseq2 MAplot lfcshrink

updated 4.2 years ago by Michael Love 43k • written 4.2 years ago by evelas13 • 0

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724

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deseq2 maplot annotation

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by rbronste ▴ 60

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3.0k

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diffbind R MAplot Chipseq

updated 5.5 years ago by Rory Stark ★ 5.2k • written 5.5 years ago by melnuesch ▴ 10

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1.6k

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deseq2 MAplot

6.0 years ago avitalwasser • 0

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1.4k

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deseq2 maplot

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by rbronste ▴ 60

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1.3k

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deseq2 normalization maplot rnaseq

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by ma619 • 0

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1.7k

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MAPLOT DESEQ2 RNASEQ

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by phurbusang • 0

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2.3k

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deseq2 maplot subset

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by rbronste ▴ 60

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1.9k

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diffbind maplot

updated 6.9 years ago by Rory Stark ★ 5.2k • written 6.9 years ago by grundelphine • 0

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1.4k

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diffbind deseq2 maplot

updated 7.1 years ago by Rory Stark ★ 5.2k • written 7.1 years ago by rbronste ▴ 60

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2.9k

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deseq2 maplot

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by jshouse ▴ 10

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2.1k

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edgeR MAplot rnaseq differential gene expression

updated 8.3 years ago by Gordon Smyth 51k • written 8.3 years ago by joseph.bergenstrahle • 0

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1.4k

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MAplot rnaseq cummerbund

8.6 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Comment: Deseq2 res Function by James W. MacDonald 67k

In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…

Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k

You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …

Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…

Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

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Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

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