Bioconductor MAPLOT

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1.8k

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DESeq2 MAplot

updated 2.6 years ago by ATpoint ★ 4.9k • written 2.6 years ago by Michael • 0

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3.3k

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MAplot

2.6 years ago Nathalie ▴ 20

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3.8k

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DESeq2 MAplot deseq

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by sp • 0

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1.1k

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deseq2 MAplot lfcshrink

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by evelas13 • 0

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884

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deseq2 maplot annotation

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by rbronste ▴ 60

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3.5k

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diffbind R MAplot Chipseq

updated 6.3 years ago by Rory Stark ★ 5.2k • written 6.3 years ago by melnuesch ▴ 10

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1.8k

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deseq2 MAplot

6.8 years ago avitalwasser • 0

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1.6k

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deseq2 maplot

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by rbronste ▴ 60

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1.4k

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deseq2 normalization maplot rnaseq

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by ma619 • 0

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1.9k

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MAPLOT DESEQ2 RNASEQ

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by phurbusang • 0

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2.7k

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deseq2 maplot subset

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by rbronste ▴ 60

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2.2k

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diffbind maplot

updated 7.7 years ago by Rory Stark ★ 5.2k • written 7.7 years ago by grundelphine • 0

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1.7k

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diffbind deseq2 maplot

updated 7.9 years ago by Rory Stark ★ 5.2k • written 7.9 years ago by rbronste ▴ 60

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3.1k

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deseq2 maplot

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by jshouse ▴ 10

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2.5k

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edgeR MAplot rnaseq differential gene expression

updated 9.1 years ago by Gordon Smyth 53k • written 9.1 years ago by joseph.bergenstrahle • 0

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1.5k

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MAplot rnaseq cummerbund

9.4 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0

Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …

Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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