Bioconductor MAPLOT

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2.7k

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deseq2 maplot

updated 6.6 years ago by Michael Love 42k • written 6.6 years ago by jshouse ▴ 10

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2.5k

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diffbind R MAplot Chipseq

updated 4.9 years ago by Rory Stark ★ 5.2k • written 4.9 years ago by melnuesch ▴ 10

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2.3k

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DESeq2 MAplot deseq

updated 3.2 years ago by Michael Love 42k • written 3.2 years ago by sp • 0

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2.1k

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MAplot

15 months ago Nathalie ▴ 20

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2.0k

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deseq2 maplot subset

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by rbronste ▴ 60

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1.8k

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edgeR MAplot rnaseq differential gene expression

updated 7.7 years ago by Gordon Smyth 50k • written 7.7 years ago by joseph.bergenstrahle • 0

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1.6k

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diffbind maplot

updated 6.3 years ago by Rory Stark ★ 5.2k • written 6.3 years ago by grundelphine • 0

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1.6k

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MAPLOT DESEQ2 RNASEQ

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by phurbusang • 0

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1.4k

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deseq2 MAplot

5.5 years ago • updated 5.4 years ago avitalwasser • 0

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1.3k

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deseq2 maplot

updated 5.5 years ago by James W. MacDonald 65k • written 5.5 years ago by rbronste ▴ 60

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1.2k

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diffbind deseq2 maplot

updated 6.6 years ago by Rory Stark ★ 5.2k • written 6.6 years ago by rbronste ▴ 60

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1.2k

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MAplot rnaseq cummerbund

8.1 years ago kritikamish99 ▴ 10

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1.1k

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deseq2 normalization maplot rnaseq

updated 5.5 years ago by Michael Love 42k • written 5.5 years ago by ma619 • 0

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986

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DESeq2 MAplot

updated 14 months ago by ATpoint ★ 4.1k • written 14 months ago by Michael • 0

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778

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deseq2 MAplot lfcshrink

updated 3.7 years ago by Michael Love 42k • written 3.7 years ago by evelas13 • 0

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592

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deseq2 maplot annotation

updated 4.5 years ago by Michael Love 42k • written 4.5 years ago by rbronste ▴ 60

16 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

That ll be helpful. Thank you.

Comment: Log-cpm values from limma by Shaimaa Gamal • 0

I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…

Comment: DSS CpG coverage threshold by j.gilbert • 0

Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Segmentation is of the whole genome, I'll write some code for doing this later today.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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