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MAPLOT
•
reset
10
votes
8
replies
2.1k
views
MA plot
MAplot
15 months ago
Nathalie
▴ 20
5
votes
8
replies
1.3k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
rbronste
▴ 60
3
votes
6
replies
1.9k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
joseph.bergenstrahle
• 0
2
votes
2
replies
2.5k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 5.0 years ago by
Rory Stark
★ 5.2k • written 5.0 years ago by
melnuesch
▴ 10
2
votes
4
replies
1.6k
views
DiffBind MA plot
diffbind
maplot
updated 6.3 years ago by
Rory Stark
★ 5.2k • written 6.3 years ago by
grundelphine
• 0
2
votes
1
reply
2.1k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
rbronste
▴ 60
1
vote
1
reply
785
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 3.7 years ago by
Michael Love
42k • written 3.7 years ago by
evelas13
• 0
1
vote
2
replies
598
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 4.5 years ago by
Michael Love
42k • written 4.5 years ago by
rbronste
▴ 60
1
vote
2
replies
1.2k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 6.6 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
rbronste
▴ 60
0
votes
0
replies
1.2k
views
error while running MAplot
MAplot
rnaseq
cummerbund
8.1 years ago
kritikamish99
▴ 10
0
votes
3
replies
2.7k
views
DESeq2 MA plot look different
deseq2
maplot
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
jshouse
▴ 10
0
votes
1
reply
1.6k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
phurbusang
• 0
0
votes
4
replies
1.1k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
ma619
• 0
0
votes
2
replies
1.4k
views
MA plot scattering pattern
deseq2
MAplot
5.5 years ago
avitalwasser
• 0
0
votes
3
replies
2.3k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
sp
• 0
0
votes
2
replies
998
views
Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 15 months ago by
ATpoint
★ 4.1k • written 15 months ago by
Michael
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Votes
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
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