Bioconductor MAplot

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2.7k

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deseq2 maplot

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by jshouse ▴ 10

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2.5k

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diffbind R MAplot Chipseq

updated 4.9 years ago by Rory Stark ★ 5.2k • written 4.9 years ago by melnuesch ▴ 10

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2.2k

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DESeq2 MAplot deseq

updated 3.1 years ago by Michael Love 41k • written 3.1 years ago by sp • 0

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2.1k

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MAplot

15 months ago Nathalie ▴ 20

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2.0k

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deseq2 maplot subset

updated 6.3 years ago by Michael Love 41k • written 6.3 years ago by rbronste ▴ 60

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1.8k

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edgeR MAplot rnaseq differential gene expression

updated 7.7 years ago by Gordon Smyth 50k • written 7.7 years ago by joseph.bergenstrahle • 0

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1.6k

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diffbind maplot

updated 6.3 years ago by Rory Stark ★ 5.2k • written 6.3 years ago by grundelphine • 0

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1.5k

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MAPLOT DESEQ2 RNASEQ

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by phurbusang • 0

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1.4k

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deseq2 MAplot

5.4 years ago avitalwasser • 0

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1.2k

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deseq2 maplot

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by rbronste ▴ 60

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1.2k

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diffbind deseq2 maplot

updated 6.6 years ago by Rory Stark ★ 5.2k • written 6.6 years ago by rbronste ▴ 60

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1.2k

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MAplot rnaseq cummerbund

8.0 years ago kritikamish99 ▴ 10

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1.1k

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deseq2 normalization maplot rnaseq

updated 5.5 years ago by Michael Love 41k • written 5.5 years ago by ma619 • 0

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949

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DESeq2 MAplot

updated 14 months ago by ATpoint ★ 4.0k • written 14 months ago by Michael • 0

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771

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deseq2 MAplot lfcshrink

updated 3.7 years ago by Michael Love 41k • written 3.7 years ago by evelas13 • 0

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586

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deseq2 maplot annotation

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by rbronste ▴ 60

16 results • Page 1 of 1

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Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length