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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
10 weeks ago alena.vanboemmel • 0
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Job: Job as a bioinformatician in Hamburg, Germany
DimensionReduction SingleCellData multiomics MachineLearning
3 months ago Diego's • 0
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Job: Group Leader (Machine Learning/AI), Centre for Molecular Medicine, University of Oslo
Biology AI Machinelearning Precisionmedicine Norway
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Hierarchical Random Forest classifier
rnaseq machinelearning random forest mlseq
7.1 years ago anthony.hawkins ▴ 10
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Job: Graduate Student in Cancer Genomics / Machine Learning Brigham Young University
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7.3 years ago Stephen Piccolo ▴ 590
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Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 7.4 years ago by 13k • written 7.4 years ago by ▴ 810
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Cannot specify probability function for extraTrees model in caret package
caret extraTrees machinelearning
7.8 years ago liuy12 • 0
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Error in R package "cancerclass" with function nvalidate
cancerclass bioconductor machinelearning classification
7.9 years ago svlachavas ▴ 810
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Machine learning methods for feature selection and possible correlation with clinical data
machinelearning clinicaldata biomarkers data integration bioconductor
7.9 years ago svlachavas ▴ 810
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Comment: Help with Error in DiffBind by Chris • 0
Thanks Rory for your reply! My peak files is .broadPeak, created from nf-core/ATAC. The PeakCallers column is broad.
Comment: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Giulia • 0
Hi Rory, Thank you for your quick reply and advice on the matter. The following are the MAplots for the analysis using the background=TRU…
Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar by ATpoint ★ 2.4k
I asked the same some years back: https://support.bioconductor.org/p/p134551/#p134561
Comment: FlowSOM with unrelated channels by helucro ▴ 70
Could you perhaps comment one why you would want to include non-biological "unrelated" channels such as time and event length for clusterin…
Answer: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Rory Stark ★ 4.7k
It is unusual to see such a big difference between the two analysis methods, although it is more likely when you have only two replicates d…
Votes
Answer: Help with Error in DiffBind
Answer: DiffBind on ATAC seq data
Comment: FlowSOM with unrelated channels
Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
Answer: Can I run DESeq2 with SMART-Seq data
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