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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 15 months ago by 51k
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
22 months ago alena.vanboemmel • 0
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Job: Job as a bioinformatician in Hamburg, Germany
DimensionReduction SingleCellData multiomics MachineLearning
23 months ago Diego's • 0
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Job: Group Leader (Machine Learning/AI), Centre for Molecular Medicine, University of Oslo
Biology AI Machinelearning Precisionmedicine Norway
2.7 years ago delete • 0
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Hierarchical Random Forest classifier
rnaseq machinelearning random forest mlseq
8.8 years ago anthony.hawkins ▴ 10
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Job: Graduate Student in Cancer Genomics / Machine Learning Brigham Young University
machinelearning cancer Job
8.9 years ago Stephen Piccolo ▴ 600
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Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 9.1 years ago by ★ 13k • written 9.1 years ago by ▴ 830
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Cannot specify probability function for extraTrees model in caret package
caret extraTrees machinelearning
9.5 years ago liuy12 • 0
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Error in R package "cancerclass" with function nvalidate
cancerclass bioconductor machinelearning classification
9.6 years ago svlachavas ▴ 830
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Machine learning methods for feature selection and possible correlation with clinical data
machinelearning clinicaldata biomarkers data integration bioconductor
9.6 years ago svlachavas ▴ 830
10 results • Page 1 of 1
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Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 870
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Comment: ANOVA like approach of edgeR by SamGG ▴ 350
Simply remove the cell type from the model. design <- model.matrix(~targets$Status)
Answer: ANOVA like approach of edgeR by Yunshun Chen ▴ 870
You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…
Answer: Identical samples after deseq2 batch effect removal by maripane • 0
Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0
The updated version worked well on my data. Thank you!
Votes
A: ANOVA-like test with edgeR
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
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