Bioconductor Meta Analysis

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microarray meta analysis

4.8 years ago lily ▴ 20

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687

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microarray microarray data Meta Analysis platform

updated 5.8 years ago by James W. MacDonald 67k • written 5.8 years ago by Jamal • 0

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1.3k

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microarray meta analysis cancer Software R

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by Jamal • 0

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704

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MAMA pvalcombination meta analysis metaMA DEGs' indices

6.6 years ago niteshkumar20sept • 0

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902

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meta analysis

7.0 years ago lily ▴ 20

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1.2k

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limma camera cohen d meta analysis

7.8 years ago Andy91 ▴ 60

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1.4k

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rnaseq metaseq clc output pvalue meta analysis

updated 7.9 years ago by Koki ▴ 10 • written 7.9 years ago by hassangiahi • 0

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1.9k

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annotation genesymbols meta analysis

8.6 years ago wahaha123 • 0

8 results • Page 1 of 1

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Comment: Deseq2 res Function by James W. MacDonald 67k

In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…

Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k

You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …

Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…

Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

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Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

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