Bioconductor Microarray

Showing : Microarray • reset

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Microarray Preprocessing NimbleGen Normalization

written 17 months ago by Sarah • 0

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oligo microarray r bioconductor

written 9.2 years ago by chandlerjd58 ▴ 10

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limma microarray block

updated 7 months ago by Gordon Smyth 50k • written 5.2 years ago by tleona3 • 0

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PROcess Microarray limma

19.3 years ago • updated 11 months ago Gordon Smyth 50k

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limma batch effect covariates microarray

updated 9 days ago by hortense96 • 0 • written 7.7 years ago by dmcleanuk ▴ 30

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limma microarray normalization

updated 8 months ago by Gordon Smyth 50k • written 3.6 years ago by linouhao ▴ 20

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Microarray limma Microarray limma

written 13.6 years ago by Pascal Gellert ▴ 80

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700

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Microarray Alignment Biostrings

written 12 months ago by sandmann.t ▴ 70

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1.0k

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limma microarray statistics

updated 1 day ago by XW • 0 • written 7.9 years ago by tati6406 • 0

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Microarray Microarray

written 16.8 years ago by David Lapointe ▴ 190

10 results • Page 1 of 1

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Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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Popular Question to rohitsatyam102 ▴ 20