Showing : Oligo • reset
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Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
11.8 years ago Elena Serrano ▴ 30
0
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4
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6.9k
views
Problem "Error: is.character(filenames) is not TRUE" in read.xysfiles (Oligo package)
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 60
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2
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2.0k
views
oligo annotation: pd.mogene.2.0.st vs pd.mogene.2.0.st.v1
Microarray Annotation oligo Microarray Annotation oligo
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 610
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1
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2.1k
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Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 12.0 years ago by ▴ 910 • written 12.0 years ago by ★ 4.3k
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2
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1.2k
views
paCalls() in oligo package fails for exon arrays (Error in normalizeSingleBracketSubscript)
oligo oligo
updated 12.0 years ago by ★ 4.3k • written 12.0 years ago by ★ 13k
0
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1
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2.2k
views
fRMA for Gene ST arrays
Microarray probe oligo frma Microarray probe oligo frma
updated 12.0 years ago by ▴ 830 • written 12.0 years ago by ▴ 10
0
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9
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3.1k
views
using frma and brainarray cdf on exon arrays
cdf affy PROcess oligo xps frma cdf affy PROcess oligo xps frma
updated 12.1 years ago by ▴ 600 • written 12.1 years ago by ▴ 100
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1.9k
views
Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
12.1 years ago Peter Crisp ▴ 10
0
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1
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1.9k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
0
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5
replies
2.4k
views
SCAN.UPC for Illumina arrays?
RNASeq qPCR affy oligo frma RNASeq qPCR affy oligo frma
updated 12.2 years ago by ▴ 600 • written 12.2 years ago by ★ 4.2k
0
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1.4k
views
Farms/Call.INI using oligo package?
probe affy oligo SIM farms probe affy oligo SIM farms
12.2 years ago Djork Clevert ▴ 210
3
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5
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2.2k
views
Farms/Call.INI using oligo package?
probe affy oligo farms probe affy oligo farms
updated 12.2 years ago by ▴ 210 • written 12.2 years ago by ▴ 270
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1
reply
3.2k
views
Analysis of Human Gene 1.1 ST Array
Microarray cdf affy PROcess oligo xps Microarray cdf affy PROcess oligo xps
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 190
0
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3
replies
2.3k
views
Summarisation in oligo package after exclusion of probes containing SNPs
probe affy oligo probe affy oligo
updated 12.2 years ago by ▴ 20 • written 12.3 years ago by ★ 13k
0
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1
reply
1.6k
views
upload multiple genelists at a time for GO or pathway enrichment
GO cdf oligo pdInfoBuilder xps GO cdf oligo pdInfoBuilder xps
updated 12.3 years ago by ▴ 190 • written 12.3 years ago by ▴ 100
0
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1
reply
2.1k
views
Coercing matrix into expression set, for normalization of only subsets of miRNAs (affy miRNA3.0)
miRNA Normalization GO Biobase affy convert oligo miRNA Normalization GO Biobase affy
updated 12.3 years ago by ▴ 190 • written 12.3 years ago by 68k
0
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3
replies
1.2k
views
RSQLite and DB problems
oligo oligo
updated 12.3 years ago by 68k • written 12.3 years ago by ★ 1.5k
0
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0
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2.9k
views
Importing quantile normalized .txt file to limma for differential expression
Normalization affy limma oligo xps Normalization affy limma oligo xps
12.4 years ago James W. MacDonald 68k
3
votes
5
replies
5.9k
views
getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 12.4 years ago by ▴ 540 • written 12.4 years ago by ▴ 380
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0
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1.5k
views
Annotating Results for HuEx 1.0 STv2 - Oligo
annotate oligo annotate oligo
12.4 years ago Bade ▴ 310
0
votes
4
replies
5.0k
views
Problem reading Cel files - Oligo Package
Annotation oligo Annotation oligo
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 310
0
votes
9
replies
2.9k
views
RNA degradation plot with oligo package GeneFeatureSet objects
affy oligo affy oligo
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 360
0
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1
reply
914
views
RMA probe summarization when sizes of probesets are unequal
Microarray Normalization probe oligo Microarray Normalization probe oligo
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
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3
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2.2k
views
oligo package attaching phenodata for HuGene2.0 ST array
oligo oligo
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
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0
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1.2k
views
getting genotypes with oligo package
SNP oligo crlmm SNP oligo crlmm
12.6 years ago Guest User ★ 13k
0
votes
2
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1.5k
views
Reading Affy CEL files
annotate affy convert oligo annotate affy convert oligo
updated 12.7 years ago by ▴ 40 • written 12.7 years ago by ▴ 10
0
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1
reply
1.9k
views
oligo package
oligo oligo
updated 12.7 years ago by ★ 4.3k • written 12.7 years ago by ★ 13k
0
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1
reply
3.9k
views
Error to import Data Affymetrix
affy oligo xps affy oligo xps
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ★ 13k
0
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1
reply
1.8k
views
error when installing package oligo
oligo oligo
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 60
0
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2
replies
2.6k
views
Annotation of Human Exon 1.0 ST
annotate biomaRt oligo annotate biomaRt oligo
updated 12.7 years ago by ★ 4.3k • written 12.7 years ago by ★ 13k
0
votes
4
replies
1.8k
views
Queries about getting annotation post-Limma analysis
Normalization affy limma biomaRt oligo Normalization affy limma biomaRt oligo
updated 12.7 years ago by ▴ 750 • written 12.7 years ago by ▴ 180
2
votes
5
replies
2.3k
views
rma of oligo feature set crashes R
oligo oligo
updated 2.9 years ago by 68k • written 12.7 years ago by ★ 1.3k
0
votes
1
reply
2.3k
views
rma command error in oligo package
oligo oligo
updated 12.8 years ago by 68k • written 12.8 years ago by ★ 13k
0
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1
reply
1.5k
views
fRMA for Gene ST arrays
affy oligo frma ASSIGN affy oligo frma ASSIGN
updated 12.8 years ago by ▴ 830 • written 12.8 years ago by ▴ 100
0
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0
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1.3k
views
faillure in ragene10stv1 in rat Gene St0.1 Affymetrix data
Annotation affy oligo xps Annotation affy oligo xps
12.8 years ago James W. MacDonald 68k
0
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0
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1.0k
views
Exon Arrays - GC & how many pm features?
oligo oligo
12.9 years ago Jonathan Cairns ▴ 60
0
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2
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2.4k
views
Problem loading the "affxparser" dependency of the "oligo" package.
affxparser oligo affxparser oligo
updated 12.9 years ago by ▴ 20 • written 12.9 years ago by ★ 2.4k
0
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1
reply
1.3k
views
Problem loading the "affxparser" dependency of the "oligo" package.
oligo oligo
updated 12.9 years ago by ★ 2.4k • written 12.9 years ago by ▴ 20
0
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17
replies
9.6k
views
Analysis of Affymetrix Mouse Gene 2.0 ST arrays
Annotation Normalization GO PROcess oligo Annotation Normalization GO PROcess oligo
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 100
0
votes
2
replies
1.6k
views
Questions about MAplot in the oligo package
oligo oligo
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ▴ 360
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0
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1.1k
views
A question about MAplot in the oligo package
oligo oligo
12.9 years ago He, Yiwen NIH/CIT ▴ 360
0
votes
0
replies
965
views
Error in sqliteExecStatement(con, statement, bind.data)
Microarray ChipName oligo Microarray ChipName oligo
13.0 years ago Guest User ★ 13k
0
votes
3
replies
1.5k
views
How to make a db package for Agilent-015354 Bovine Oligo Microarray (4x44K)?
Microarray Annotation oligo Microarray Annotation oligo
updated 13.0 years ago by ▴ 140 • written 13.0 years ago by ★ 13k
0
votes
12
replies
9.1k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray GO oligo AnnotationForge Microarray GO oligo AnnotationForge
13.0 years ago James W. MacDonald 68k
0
votes
0
replies
990
views
CHARM: Affymetrix 1.0R tiling arrays import
BSgenome affy BSgenome oligo charm BSgenome affy BSgenome oligo charm
13.0 years ago Guest User ★ 13k
0
votes
1
reply
2.0k
views
filtering Gene 1.0 ST chips
TimeCourse probe timecourse oligo TimeCourse probe timecourse oligo
updated 13.0 years ago by ▴ 910 • written 13.0 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray oligo Microarray oligo
updated 13.0 years ago by ★ 7.2k • written 13.0 years ago by ★ 13k
0
votes
3
replies
1.4k
views
Differences in results analyzing Mouse Gene 1.0-ST using oligo and affy package
affy limma oligo affy limma oligo
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 20
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2
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1.5k
views
Oligo - oligo::probeNames() returns transcript clusters, not probe sets
probe oligo probe oligo
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 120
0
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8
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2.8k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 13.1 years ago by 68k • written 13.1 years ago by ▴ 110
430 results • Page 4 of 9
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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
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A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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