Showing : Oligo • reset
7
votes
16
replies
3.2k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0 ggh3 oligo glue grant
updated 9.8 years ago by 68k • written 9.8 years ago by ★ 3.4k
0
votes
1
reply
2.1k
views
PLIER normalization for Affymetrix GeneChip arrays?
microarray affymetrix oligo RMA normalization
updated 9.8 years ago by 68k • written 9.8 years ago by ▴ 20
3
votes
1
reply
1.9k
views
what is fitProbeLevelModel()? doing
affymetrix oligo microarray
updated 9.8 years ago by 68k • written 9.8 years ago by ▴ 20
0
votes
5
replies
3.2k
views
Load CDF files for Affymetrix ST 2.0 microarrays
microarray oligo cdf customcdf
updated 9.9 years ago by ★ 4.1k • written 9.9 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Looking for a package allowing Affymetrix MoGene2.1ST processing
affy xps rma oligo
updated 9.9 years ago by ★ 4.1k • written 9.9 years ago by ▴ 10
3
votes
9
replies
5.2k
views
Confused by the probe design of Affymetrix Human Transcriptome Array (HTA 2.0)
microarray normalization oligo
updated 9.9 years ago by • 0 • written 10.9 years ago by ▴ 30
1
vote
5
replies
2.2k
views
HuGene2.0 array annotation
annotation oligo pd.hugene.2.0.st
9.9 years ago sylvia ▴ 10
1
vote
11
replies
4.7k
views
oligo package requires the annotation package pd.ht.mg.430.pm - where is it?
oligo microarray annotation
updated 10.0 years ago by 68k • written 10.0 years ago by • 0
7
votes
6
replies
6.4k
views
How to use brainarray custom cdf with oligo package?
oligo customcdf HTA frma
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 20
1
vote
6
replies
1.7k
views
Intronic sequences are the majority of the top differentially expressed genes
limma microarray normalization oligo differential gene expression
updated 10.1 years ago by 68k • written 10.1 years ago by • 0
0
votes
4
replies
1.2k
views
Unavailable chip layout packages for `olgio` package
microarray oligo
updated 10.1 years ago by 68k • written 10.1 years ago by • 0
0
votes
2
replies
3.3k
views
Error with oligo: environmentIsLocked
oligo bioconductor genefilter
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 10
0
votes
1
reply
1.6k
views
extract raw expression values in oligo package
oligo affymetrix raw expression
10.1 years ago queso012 • 0
0
votes
0
replies
1.3k
views
sqliteSendQuery(con, statement, bind.data) error using makePdInfoPackage for Nimblegen array
microarray R oligo micro array data annotation
10.1 years ago zenekzkk • 0
2
votes
5
replies
6.3k
views
Oligo package RMA() function giving error
oligo rma
updated 10.1 years ago by ★ 4.3k • written 10.1 years ago by ▴ 30
1
vote
2
replies
1.4k
views
Gene Ontology Problems
software error go microarray oligo hugene20st
updated 10.2 years ago by 68k • written 10.2 years ago by ▴ 10
1
vote
2
replies
2.4k
views
Problems with the genes name
annotation software error microarray oligo annotationdbi
updated 10.2 years ago by 68k • written 10.2 years ago by ▴ 10
1
vote
8
replies
10k
views
"Subscript out of bounds" erorr during microarray analysis with Limma
oligo limma bioconductor affymetrix microarrays
10.2 years ago Claudia ▴ 10
1
vote
0
replies
2.6k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo pdInfoBuilder pd.hta.2.0
10.2 years ago tangboyun ▴ 30
10
votes
13
replies
5.2k
views
Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.ST using R with oligo and limma package
R limma oligo differential gene expression affymetrix microarrays
updated 10.2 years ago by • 0 • written 10.3 years ago by ▴ 10
7
votes
4
replies
6.5k
views
Gene symbols on MA-plot
limma plot.MA volcanoplot oligo
updated 10.3 years ago by 53k • written 10.3 years ago by ▴ 60
0
votes
4
replies
1.3k
views
Resummarisation of Exon array normalised at probeset level to gene level
normalization oligo limma
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 40
0
votes
1
reply
2.4k
views
how to get tissue name of cel files?
pca oligo cel
updated 10.3 years ago by ▴ 60 • written 10.3 years ago by • 0
0
votes
1
reply
1.9k
views
The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
0
votes
2
replies
1.5k
views
Error with annotation package with pdInfoBuilder for NimbleGen arrays
pdinfobuilder oligo
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
6
votes
22
replies
5.2k
views
Oligo package: paCalls questions
microarray oligo
updated 10.3 years ago by ★ 3.9k • written 10.3 years ago by ▴ 20
3
votes
4
replies
3.6k
views
pd.huex.1.0.st.v2 package doubt
oligo exon array analysis
updated 10.3 years ago by ★ 7.2k • written 10.3 years ago by ▴ 30
0
votes
5
replies
6.0k
views
How to do Affy ST array analysis
Annotation Normalization hgu133a probe affy oligo Annotation Normalization hgu133a probe
updated 10.3 years ago by • 0 • written 11.4 years ago by ★ 13k
2
votes
1
reply
1.4k
views
paCalls(affyobject, "DABG/PSDABG") output dimension
oligo paCalls
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 30
0
votes
2
replies
2.2k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 10.4 years ago by ▴ 20 • written 11.7 years ago by ▴ 40
2
votes
16
replies
3.6k
views
Possible ways of performing non-specific intensity filtering on Perfect-match only affymetrix array
oligo DABG non-specific filtering primeview
10.5 years ago svlachavas ▴ 840
1
vote
10
replies
5.9k
views
How to use brainarray custom cdf with any bioconductor package?
affy oligo customcdf
10.8 years ago • updated 10.5 years ago rishi.dasroy ▴ 20
1
vote
2
replies
2.8k
views
Warning Message-depreciated after running rma in oligo package
oligo pd.ragene.2.0.st
10.5 years ago Surles, Monique ▴ 50
2
votes
15
replies
4.3k
views
Annotation of Affy Porcine Gene 1.0 ST array data
limma oligo annotation
updated 9 weeks ago by • 0 • written 10.8 years ago by • 0
2
votes
6
replies
3.0k
views
Questions about analysis of GeneChip Rat Gene 2.0 ST Array
microarray affy oligo annotation
10.7 years ago khosoda • 0
1
vote
2
replies
1.4k
views
Exon probesets as "core" probsets in pd.mogene.2.0.st
oligo pd.mogene.2.0.st
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
1
vote
3
replies
1.6k
views
Integating phenodata with PorGene 1.0 ST array
oligo annotation
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
1
vote
5
replies
2.0k
views
Oligo package: paCalls question
oligo
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 60
0
votes
1
reply
2.1k
views
Filtering pmSequence based on probe target level for HTA 2.0 arrays
Annotation probe oligo Annotation probe oligo
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 600
3
votes
2
replies
2.1k
views
Package oligo: Transcript level P/A calls
oligo oligo
updated 11.2 years ago by ★ 3.9k • written 11.2 years ago by ▴ 50
0
votes
0
replies
976
views
Follow up on progress for brainarray cdfs on exon arrays.
Cancer oligo Cancer oligo
11.2 years ago Sin Yee Ku ▴ 10
0
votes
4
replies
2.2k
views
Affymetrix mouse 430_2 array - gene expression and annotation
Annotation mouse4302 probe oligo Annotation mouse4302 probe oligo
updated 11.2 years ago by 68k • written 11.2 years ago by ▴ 550
0
votes
4
replies
2.0k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 11.2 years ago by ★ 3.9k • written 11.2 years ago by 68k
0
votes
1
reply
1.6k
views
RMA Normalization Nimblegen with adf.txt file
Normalization Vitis vinifera oligo Normalization Vitis vinifera oligo
updated 11.2 years ago by ▴ 80 • written 11.3 years ago by ▴ 30
0
votes
5
replies
3.1k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 11.3 years ago by ▴ 160 • written 11.3 years ago by 68k
0
votes
1
reply
1.5k
views
Duplicate probe coordinates with pd.hugene.2.1.st and oligo
probe affy PROcess oligo probe affy PROcess oligo
updated 11.3 years ago by 68k • written 11.3 years ago by ▴ 600
0
votes
1
reply
1.2k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
probe oligo probe oligo
updated 11.3 years ago by 68k • written 11.3 years ago by ▴ 50
0
votes
0
replies
1.4k
views
Issues about how to use rma and paCalls to filter probe sets together
probe PROcess oligo probe PROcess oligo
11.3 years ago 张超 ▴ 50
0
votes
2
replies
2.0k
views
makecdfenv package bug
cdf affy affxparser oligo cdf affy affxparser oligo
updated 11.3 years ago by ▴ 10 • written 11.3 years ago by 68k
0
votes
1
reply
1.3k
views
oligo package - Unable to read HT-U133A CEL files
affy oligo affy oligo
updated 11.4 years ago by ★ 4.3k • written 11.4 years ago by ▴ 600
430 results • Page 3 of 9
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Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
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The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
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`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
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Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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