Showing : Oligo • reset
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Oligo package and tiling arrays - PM and MM
cdf affyio oligo BufferedMatrix cdf affyio oligo BufferedMatrix
17.9 years ago Naira Naouar ▴ 140
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749
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About ndups error chol(V)
Microarray limma oligo Microarray limma oligo
17.9 years ago Gordon Smyth 53k
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995
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makePDpackage: Problem loading PD package in, oligo:read.celfiles function
cdf oligo cdf oligo
17.9 years ago Matt Settles ▴ 10
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1
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1.1k
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request for simple usage of probe level normalisations
cdf gcrma oligo pdInfoBuilder cdf gcrma oligo pdInfoBuilder
updated 18.0 years ago by ★ 6.5k • written 18.0 years ago by ▴ 320
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5
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1.2k
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Making a PD package for Oligo
cdf oligo makePlatformDesign cdf oligo makePlatformDesign
updated 18.0 years ago by ★ 4.3k • written 18.0 years ago by ▴ 40
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1
reply
1.2k
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batch effects and VSN
Normalization Regression vsn limma oligo Normalization Regression vsn limma oligo
updated 18.0 years ago by ★ 13k • written 18.0 years ago by ▴ 330
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904
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Getting associated genes from SNP anntotation files
SNP oligo SNP oligo
18.1 years ago Holger Schwender ▴ 900
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1
reply
908
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appropriate statistical test for post-array analysis
probe oligo probe oligo
updated 18.1 years ago by ★ 6.0k • written 18.1 years ago by ▴ 100
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3
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1.9k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 18.1 years ago by ★ 7.4k • written 18.2 years ago by ▴ 10
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Nimblegen analysis using oligo
oligo oligo
18.2 years ago Rene Dreos JIC ▴ 50
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1
reply
896
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Memory problems with the Oligo package
oligo oligo
updated 18.3 years ago by ★ 4.3k • written 18.3 years ago by ▴ 40
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4
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1.5k
views
SNPRMA: Normalizing...Error in readChar(con, 5) : cannot open the connection
oligo oligo
updated 18.3 years ago by ★ 4.3k • written 18.3 years ago by ▴ 50
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1
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859
views
Error in the Oligo package with pd.mapping50k.xba240
GUI oligo GUI oligo
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 40
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889
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Documentation needed for Oligo package
oligo oligo
updated 18.3 years ago by ★ 4.3k • written 18.3 years ago by ▴ 40
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4
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1.8k
views
memory error on unix
oligo oligo
updated 18.3 years ago by ▴ 30 • written 18.3 years ago by ▴ 120
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1.2k
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Normalization of 2 color Nimblegen array
cdf affy affyPLM convert oligo makePlatformDesign cdf affy affyPLM convert oligo
18.3 years ago dhruv pant ▴ 30
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2
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1.6k
views
crlmm error: cluster centres
oligo oligo
updated 18.3 years ago by ★ 4.3k • written 18.3 years ago by ▴ 120
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3
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1.3k
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Fwd: pmStrand() in oligo (version...)
SNP oligo SNP oligo
18.4 years ago Benilton Carvalho ★ 4.3k
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1
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1.2k
views
Problem with snprma
SNP Biobase oligo BufferedMatrix SNP Biobase oligo BufferedMatrix
updated 18.4 years ago by ★ 4.3k • written 18.4 years ago by ▴ 80
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2
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1.2k
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Nimblegen data analysis
GO cdf affy oligo GO cdf affy oligo
updated 18.4 years ago by ▴ 140 • written 18.4 years ago by ★ 2.2k
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Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
18.5 years ago Paquet, Agnes ▴ 500
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1.2k
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verification
GO limma impute oligo makePlatformDesign crlmm GO limma impute oligo makePlatformDesign
18.6 years ago Vasiliki Xiarchou ▴ 10
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8
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1.9k
views
crlmm warning
oligo crlmm oligo crlmm
updated 18.6 years ago by ★ 4.3k • written 18.6 years ago by ▴ 190
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1.2k
views
Affymetrix promoter arrays
Normalization oligo Normalization oligo
18.6 years ago Jenny Drnevich ★ 2.2k
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1.2k
views
question about the value retured by function ontoCompare()
GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo
18.6 years ago Paquet, Agnes ▴ 500
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8
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2.2k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ★ 2.2k
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778
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makePDpackage for tiling arrays
oligo oligo
18.7 years ago Jenny Drnevich ★ 2.2k
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1
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836
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Finding peaks on tiling arrays/ moving average?
oligo oligo
updated 18.7 years ago by 21k • written 18.7 years ago by ★ 1.9k
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5
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1.6k
views
Looking for R package for Nimblegen expression data
oligo makePlatformDesign oligo makePlatformDesign
18.7 years ago Xinxia Peng ▴ 120
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2
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1.5k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 18.7 years ago by 21k • written 18.7 years ago by ▴ 50
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3
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1.3k
views
saturated spots
limma oligo limma oligo
updated 18.7 years ago by ★ 1.9k • written 18.7 years ago by ▴ 330
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2
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1.2k
views
"oligo" crashes in windows XP
SNP GO affyio oligo crlmm SNP GO affyio oligo crlmm
updated 18.7 years ago by ★ 4.3k • written 18.7 years ago by ▴ 190
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1
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1.3k
views
goTools problem
goTools oligo goTools oligo
updated 18.7 years ago by ▴ 500 • written 18.7 years ago by ▴ 30
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6
replies
2.1k
views
Normalization between arrays for common reference, time course and direct two color designs
Normalization limma oligo Normalization limma oligo
18.8 years ago Jenny Drnevich ★ 2.2k
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4
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1.5k
views
VSN exclusion of probes
probe vsn oligo probe vsn oligo
updated 18.9 years ago by ★ 13k • written 18.9 years ago by ▴ 330
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718
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[Bioc-devel] I will succeed (hopefully) the installation of Bioconductor 2.0
probe affy oligo probe affy oligo
19.0 years ago Francois Pepin ★ 1.3k
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3
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1.6k
views
Spatial Correction
SNP Normalization affy oligo SNP Normalization affy oligo
updated 19.0 years ago by ▴ 120 • written 19.0 years ago by ▴ 170
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1
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1.1k
views
makePlatformDesign error
affyio oligo makePlatformDesign affyio oligo makePlatformDesign
updated 19.0 years ago by 68k • written 19.0 years ago by ▴ 20
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1
reply
705
views
creating platformdesign affy_250k nsp
PROcess oligo PROcess oligo
updated 19.0 years ago by 68k • written 19.0 years ago by ▴ 70
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votes
1
reply
675
views
cdfenv files ATTN: James McDonald part II
oligo oligo
updated 19.1 years ago by 21k • written 19.1 years ago by ▴ 20
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1
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1.3k
views
athPkgBuilder data source
Annotation Pathways GO probe oligo Annotation Pathways GO probe oligo
updated 19.2 years ago by ▴ 250 • written 19.2 years ago by ▴ 870
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916
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[Bioc-devel] Appropriate linear model analysis for microarray time course comparison
TimeCourse limma timecourse oligo TimeCourse limma timecourse oligo
19.4 years ago Sean Davis 21k
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1
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1.5k
views
reference design
limma limmaGUI oligo limma limmaGUI oligo
updated 19.4 years ago by ★ 6.0k • written 19.4 years ago by ▴ 30
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0
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1.5k
views
parameterization or contrast matrix?
limma limmaGUI oligo limma limmaGUI oligo
19.4 years ago bzzandrew@interfree.it ▴ 30
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0
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842
views
FW: Does combineAffyBatch of package matchprobes elimi nate the wrong probe sets?
Normalization probe oligo Normalization probe oligo
19.6 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
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0
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751
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FW: Does combineAffyBatch of package matchprobes eliminate the wrong probe sets?
Normalization probe oligo Normalization probe oligo
19.6 years ago Wolfgang Huber ★ 13k
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3
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2.1k
views
Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
19.7 years ago • updated 19.6 years ago Pete ▴ 70
0
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7
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2.1k
views
presence/absence call using oligo array?
Microarray oligo Microarray oligo
19.7 years ago xpeng ▴ 60
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1
reply
1.2k
views
AnnBuilder/ABPkgBuilder URL problem
Annotation GO AnnBuilder oligo Annotation GO AnnBuilder oligo
updated 19.8 years ago by ▴ 780 • written 19.8 years ago by ▴ 100
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0
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795
views
Fwd:decideTests nestedF
limma oligo limma oligo
19.8 years ago daniela.marconi@libero.it ▴ 100
430 results • Page 8 of 9
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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error by James W. MacDonald 68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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