Showing : PHYLOSEQ • reset
0
votes
0
replies
1.8k
views
Phylogenetic tree from marker genes
ape phyloseq dist metagenomics
8.9 years ago David ▴ 860
1
vote
1
reply
4.6k
views
Normalization/Transformation Before Microbiome Alpha Diversity Analysis
microbiome normalization variancestabilizingtransformation phyloseq
8.9 years ago stats134711 • 0
0
votes
1
reply
2.8k
views
ggtree facet_plot question using geom_boxplot to plot abundance data corresponding to tree tips
ggtree ggplot2 phyloseq geom_boxplot facet_plot
updated 9.0 years ago by ★ 1.2k • written 9.0 years ago by • 0
2
votes
2
replies
2.1k
views
DESeq2 in phyloseq
deseq2 phyloseq
9.0 years ago sarahmacdonald86 • 0
0
votes
2
replies
2.5k
views
Controlling colours assigned to order in DeSeq2 plot in phyloseq
phyloseq color ggplot2
updated 9.0 years ago by 43k • written 9.0 years ago by • 0
1
vote
2
replies
1.9k
views
rlogTransformation vs getVarianceStabilizedData
deseq2 r phyloseq
updated 9.2 years ago by 43k • written 9.2 years ago by ▴ 10
0
votes
1
reply
2.8k
views
Error with phyloseq R package with Conda install
software error phyloseq anaconda
written 9.3 years ago by • 0
0
votes
1
reply
2.7k
views
phyloseq biom json format conversion needed to hdf5 format for qiime
biom json hdf5 qiime phyloseq
updated 9.3 years ago by ▴ 550 • written 9.3 years ago by • 0
0
votes
1
reply
2.8k
views
phyloseq merge_samples attempt to set rownames on an object with no dimensions
phyloseq merge_samples rownames error
9.4 years ago newmanss • 0
0
votes
3
replies
2.0k
views
DESeq2 blocking by condition over time
deseq2 phyloseq time course
9.5 years ago akp • 0
0
votes
0
replies
1.1k
views
displaying network from microbial count data
phyloseq
9.6 years ago chrisclarkson100 ▴ 50
0
votes
0
replies
1.2k
views
Testing for OTUs with negatively correlated abundances/occurrences
phyloseq
9.6 years ago am39 • 0
0
votes
3
replies
2.5k
views
Newer version of DESeq2 gives different results
deseq2 phyloseq
updated 9.7 years ago by 43k • written 9.7 years ago by • 0
0
votes
1
reply
1.3k
views
Aditional undesired sample
phyloseq
9.9 years ago sanrrone • 0
3
votes
2
replies
2.6k
views
DESEQ2 (R) design/contrast formula questions
deseq2 phyloseq multiple factor design paired samples
updated 9.9 years ago by ▴ 20 • written 9.9 years ago by ▴ 10
2
votes
2
replies
7.5k
views
Interpretation of intercept-only model (~1) in DESeq2
deseq2 phyloseq
updated 10.0 years ago by 43k • written 10.0 years ago by ▴ 10
0
votes
6
replies
4.2k
views
Alpha diversity on Rlogtransformed data
deseq2 phyloseq metagenomeseq
10.2 years ago David ▴ 860
2
votes
1
reply
2.3k
views
Using DESeq2 after agglomerating OTUs
phyloseq deseq2 estimatesizefactors
updated 10.2 years ago by 43k • written 10.3 years ago by • 0
0
votes
1
reply
1.7k
views
phyloseq - plot_bar() error
phyloseq plot_bar()
updated 10.3 years ago by ▴ 20 • written 10.3 years ago by ▴ 120
2
votes
9
replies
22k
views
Error in file(con, “r”) : cannot open the connection
r phyloseq import_biom otu qiime
updated 10.4 years ago by ▴ 20 • written 10.4 years ago by • 0
1
vote
10
replies
2.9k
views
Multi-factor Comparison in DESeq 2 Issue
deseq2 phyloseq
updated 11.1 years ago by ★ 7.9k • written 11.1 years ago by • 0
0
votes
3
replies
6.1k
views
Phyloseq: How to add sample table to phyloseq object
phyloseq sample_table phyloseq
written 11.1 years ago by ▴ 120
0
votes
0
replies
1.8k
views
Loading Phyloseq into R- R crashes
software error phyloseq R
11.1 years ago locon833 • 0
0
votes
1
reply
1.7k
views
DESeqs two-factor two-level, interaction is interested
Sequencing GO phyloseq DESeq2 Sequencing GO phyloseq DESeq2
11.7 years ago • updated 11.6 years ago Shucong Li ▴ 60
1
vote
2
replies
2.5k
views
DESeqs two-factor two-level, interaction is interested
Sequencing GO phyloseq DESeq2 Sequencing GO phyloseq DESeq2
updated 11.7 years ago by 43k • written 11.7 years ago by ▴ 60
0
votes
0
replies
1.4k
views
Phyloseq/DEseq transformed data
DESeq phyloseq DESeq phyloseq
11.9 years ago Susan Holmes ▴ 120
76 results • Page 2 of 2
Recent ...
Replies
Answer: bcftools norm Equivalent by a2a2hd42aa • 0
it lacks a direct, single function equivalent to bcftools norm for variant normalization. Bioinformaticians often bridge this gap by using …
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Awards • All
Popular Question to Jaqueline • 0
Scholar to Gordon Smyth 53k
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to chirag.parsania ▴ 10
Popular Question to Michael Love 43k
Locations • All
Pakistan, 1 minute ago
United States, 12 minutes ago
WEHI, Melbourne, Australia, 19 minutes ago
United States, 35 minutes ago
The city by the bay, 46 minutes ago
Traffic: 1311 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6