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PROcess
•
reset
0
votes
0
replies
1.3k
views
KEGG pathway layout/rendering
Pathways
graph
PROcess
Pathways
graph
PROcess
17.3 years ago
Sim, Fraser
▴ 350
0
votes
0
replies
1.0k
views
lumi ID mapping issues
Annotation
probe
PROcess
lumi
Annotation
probe
PROcess
lumi
17.3 years ago
Pan Du
★ 1.2k
0
votes
2
replies
985
views
Custom annotation for a package in development?
Annotation
PROcess
Annotation
PROcess
updated 17.4 years ago by
rgentleman
★ 5.5k • written 17.4 years ago by
Nathan Harmston
▴ 100
0
votes
2
replies
1.5k
views
Simpleaffy: how are 3/5 ratios calculated
graph
simpleaffy
PROcess
graph
simpleaffy
PROcess
updated 17.4 years ago by
Yogi Sundaravadanam
▴ 320 • written 17.4 years ago by
Ganiraju Manyam
▴ 50
0
votes
2
replies
1.8k
views
GO over representation analysis
Annotation
Pathways
GO
Organism
db0
AnnBuilder
PROcess
maanova
AnnotationDbi
Annotation
updated 17.4 years ago by
Kort, Eric
▴ 220 • written 17.4 years ago by
Marc Carlson
★ 7.2k
0
votes
2
replies
1.5k
views
Agilent MAGE-ML
RMAGEML
GeneSpring
PROcess
RMAGEML
GeneSpring
PROcess
updated 17.5 years ago by
Martin Morgan
25k • written 17.5 years ago by
gabriele bucci
▴ 10
0
votes
0
replies
1.8k
views
gcRMA on a GeneFeatureSet from Affy MoGene 1.0 ST v1?
Annotation
probe
affy
gcrma
PROcess
oligo
Annotation
probe
affy
gcrma
PROcess
oligo
17.5 years ago
Jean Hausser
▴ 20
0
votes
0
replies
966
views
error using lumiR
PROcess
lumi
PROcess
lumi
17.6 years ago
Kristen K Dang
▴ 50
0
votes
5
replies
2.0k
views
Working with Affymetrix Files
PROcess
PROcess
updated 17.6 years ago by
Mark Cowley
▴ 400 • written 17.6 years ago by
A A
▴ 30
0
votes
1
reply
1.3k
views
how to import mas5 data into expresso (affy package)
Microarray
limma
PROcess
affylmGUI
Microarray
limma
PROcess
affylmGUI
updated 17.6 years ago by
James W. MacDonald
68k • written 17.6 years ago by
Manisha Brahmachary
▴ 80
0
votes
2
replies
763
views
analysis ChIP-seq data
PROcess
PROcess
updated 17.7 years ago by
Martin Morgan
25k • written 17.7 years ago by
Bogdan
▴ 670
0
votes
6
replies
2.1k
views
limma and marray data import problem
Microarray
Normalization
limma
PROcess
marray
Microarray
Normalization
limma
PROcess
updated 17.7 years ago by
Gordon Smyth
53k • written 17.7 years ago by
Piotr Stępniak
▴ 90
0
votes
1
reply
1.0k
views
limma and single-dye (R) gpr
PROcess
PROcess
updated 17.7 years ago by
Paul Geeleher
★ 1.3k • written 17.7 years ago by
Ng Stanley
▴ 230
0
votes
3
replies
1.2k
views
limma and marray data import problem
Microarray
PROcess
Microarray
PROcess
updated 17.7 years ago by
Gordon Smyth
53k • written 17.7 years ago by
Piotr Stępniak
▴ 90
0
votes
0
replies
864
views
limma and marray data import problem
Microarray
PROcess
Microarray
PROcess
17.7 years ago
Piotr Stępniak
▴ 90
0
votes
2
replies
1.5k
views
Help on data processing using *lumi* package
PROcess
PROcess
updated 17.7 years ago by
Sean Davis
21k • written 17.7 years ago by
affy snp
▴ 640
0
votes
0
replies
1.0k
views
Error in rma When Using Temp File from xps Package
Preprocessing
PROcess
xps
Preprocessing
PROcess
xps
17.7 years ago
cstrato
★ 3.9k
0
votes
0
replies
927
views
Bioconductor and R 2.7
PROcess
PROcess
17.8 years ago
Patrick Aboyoun
★ 1.6k
0
votes
2
replies
1.3k
views
Error in rma When Using Temp File from xps Package
PROcess
xps
PROcess
xps
updated 17.8 years ago by
cstrato
★ 3.9k • written 17.8 years ago by
Stephen Piccolo
▴ 600
0
votes
0
replies
1.1k
views
How to get all genes in the summary table of siggenes SAM
PROcess
PROcess
17.8 years ago
wxu@msi.umn.edu
▴ 220
0
votes
0
replies
690
views
information about PROcess package
PROcess
PROcess
17.8 years ago
cipriano@unisi.it
▴ 10
0
votes
2
replies
2.0k
views
agilent zebrafish array annotation
Annotation
zebrafish
AnnBuilder
PROcess
AnnotationDbi
Annotation
zebrafish
AnnBuilder
17.8 years ago
Georg Otto
▴ 510
0
votes
0
replies
3.5k
views
topGO enrichment using ensembl gene list
Microarray
Annotation
GO
PROcess
globaltest
topGO
Microarray
Annotation
GO
PROcess
topGO
17.9 years ago
Adrian Alexa
▴ 400
0
votes
3
replies
1.6k
views
vsn with a reference set
vsn
PROcess
vsn
PROcess
updated 17.9 years ago by
Wolfgang Huber
★ 13k • written 17.9 years ago by
Roumyana Yordanova
▴ 110
0
votes
0
replies
1.3k
views
multtest MTP: Error: cannot allocate vector
genefilter
PROcess
genefilter
PROcess
17.9 years ago
Timur Shtatland
▴ 30
0
votes
0
replies
837
views
probe and probeset removal script
Microarray
PROcess
Microarray
PROcess
17.9 years ago
Jenny Drnevich
★ 2.2k
0
votes
0
replies
1.9k
views
Your Online Access has been Suspended
PROcess
PROcess
18.0 years ago
NatWest Bank Plc.
▴ 10
0
votes
0
replies
782
views
Survey for genetics labs: how do you store & manage your data?
Sequencing
Genetics
PROcess
Sequencing
Genetics
PROcess
18.0 years ago
Matthew Keller
▴ 100
0
votes
0
replies
1.2k
views
BIRD 2008 Call for workshop proposals
PROcess
PROcess
18.2 years ago
Prof. Roland Wagner
▴ 100
0
votes
2
replies
1.4k
views
exonmap questions
affy
PROcess
exonmap
affy
PROcess
exonmap
updated 18.2 years ago by
James W. MacDonald
68k • written 18.2 years ago by
Jianping Jin
▴ 890
0
votes
0
replies
921
views
GO graph plotting with some in color
GO
Clustering
graph
PROcess
GO
Clustering
graph
PROcess
18.2 years ago
Loren Engrav
★ 1.0k
0
votes
4
replies
1.5k
views
Rgraphviz, deprecated imageMap
Rgraphviz
PROcess
GOstats
Rgraphviz
PROcess
GOstats
updated 18.2 years ago by
rgentleman
★ 5.5k • written 18.2 years ago by
Ariel Chernomoretz
▴ 170
0
votes
2
replies
1.4k
views
Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?
limma
PROcess
limma
PROcess
updated 18.2 years ago by
dorthe.belgardt@medisin.uio.no
▴ 40 • written 18.2 years ago by
Gordon Smyth
53k
0
votes
0
replies
863
views
adding KEGG annotations with ABPkBuilder from E.coli
Annotation
affy
PROcess
Annotation
affy
PROcess
18.2 years ago
Robert Castelo
★ 3.4k
0
votes
0
replies
1.0k
views
Analysis of Illumina methylation array data using beadarray
Cancer
PROcess
beadarray
Cancer
PROcess
beadarray
18.2 years ago
Kellie J. Archer, Ph.D.
▴ 120
0
votes
0
replies
1.5k
views
biocep project - R for the Web and the Virtual R Workbench
Infrastructure
PROcess
Infrastructure
PROcess
18.2 years ago
kchine@ebi.ac.uk
▴ 10
0
votes
3
replies
1.6k
views
makeGOGraph internode distance
GO
PROcess
GO
PROcess
updated 18.2 years ago by
rgentleman
★ 5.5k • written 18.2 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
1.1k
views
BIRD 2008 Call for workshop proposals
PROcess
PROcess
18.2 years ago
Prof. Roland Wagner
▴ 100
0
votes
1
reply
3.2k
views
BIRD 2008
Genetics
Pathways
Cancer
PROcess
microRNA
a4
Genetics
Pathways
Cancer
PROcess
microRNA
18.3 years ago • updated 18.2 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.1k
views
Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?
limma
PROcess
limma
PROcess
18.3 years ago
dorthe.belgardt@medisin.uio.no
▴ 40
0
votes
2
replies
1.7k
views
RE : Limma: Normalization with large numbers ofdifferentially expressed genes
Normalization
Cancer
PROcess
Normalization
Cancer
PROcess
updated 18.3 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.3 years ago by
Serge Eifes
▴ 90
0
votes
1
reply
1.7k
views
Limma: Normalization with large numbers of differentially expressed genes
Normalization
Cancer
limma
PROcess
Normalization
Cancer
limma
PROcess
updated 18.3 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.3 years ago by
Serge Eifes
▴ 90
0
votes
3
replies
1.9k
views
Biomart query in Web interface Vs. biomaRt package?
GO
PROcess
biomaRt
GO
PROcess
biomaRt
updated 18.3 years ago by
Steffen
▴ 500 • written 18.3 years ago by
J.J.P.Lebrec@lumc.nl
▴ 30
0
votes
0
replies
995
views
affylmGUI: options for 'Export HTML Report'?
PROcess
affylmGUI
PROcess
affylmGUI
18.4 years ago
Keith Satterley
▴ 450
0
votes
4
replies
2.7k
views
disagreement between biomaRt and topGO
GO
hgu133plus2
annotate
geneplotter
graph
Rgraphviz
PROcess
goTools
biomaRt
Category
GO
updated 18.4 years ago by
Steffen
▴ 500 • written 18.4 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
1.0k
views
T32 Post-Doctoral Training Position in Biostatistics/Toxicogenomics
PROcess
PROcess
18.4 years ago
Kellie J. Archer, Ph.D.
▴ 120
0
votes
1
reply
1.0k
views
goTools: ontoCompare - GO list
GO
PROcess
GO
PROcess
updated 18.5 years ago by
Paquet, Agnes
▴ 500 • written 18.5 years ago by
Christelle Dantec
▴ 20
0
votes
0
replies
755
views
problems in limma
Microarray
probe
limma
PROcess
Microarray
probe
limma
PROcess
18.5 years ago
Gordon Smyth
53k
0
votes
0
replies
1.2k
views
problems in limma
Microarray
probe
limma
PROcess
Microarray
probe
limma
PROcess
18.5 years ago
De-Jian ZHAO
▴ 240
0
votes
1
reply
889
views
affyQCReport before and after normalization
PROcess
PROcess
updated 18.5 years ago by
James W. MacDonald
68k • written 18.5 years ago by
Sebastien Gerega
▴ 30
651 results • Page
9 of 14
Recent ...
Replies
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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43k
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to
fl
▴ 20
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to
James W. MacDonald
68k
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▴ 140
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