Showing : PROcess • reset
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KEGG pathway layout/rendering
Pathways graph PROcess Pathways graph PROcess
17.3 years ago Sim, Fraser ▴ 350
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lumi ID mapping issues
Annotation probe PROcess lumi Annotation probe PROcess lumi
17.3 years ago Pan Du ★ 1.2k
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2
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985
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Custom annotation for a package in development?
Annotation PROcess Annotation PROcess
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 100
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1.5k
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Simpleaffy: how are 3/5 ratios calculated
graph simpleaffy PROcess graph simpleaffy PROcess
updated 17.4 years ago by ▴ 320 • written 17.4 years ago by ▴ 50
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GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 17.4 years ago by ▴ 220 • written 17.4 years ago by ★ 7.2k
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1.5k
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Agilent MAGE-ML
RMAGEML GeneSpring PROcess RMAGEML GeneSpring PROcess
updated 17.5 years ago by 25k • written 17.5 years ago by ▴ 10
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1.8k
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gcRMA on a GeneFeatureSet from Affy MoGene 1.0 ST v1?
Annotation probe affy gcrma PROcess oligo Annotation probe affy gcrma PROcess oligo
17.5 years ago Jean Hausser ▴ 20
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966
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error using lumiR
PROcess lumi PROcess lumi
17.6 years ago Kristen K Dang ▴ 50
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2.0k
views
Working with Affymetrix Files
PROcess PROcess
updated 17.6 years ago by ▴ 400 • written 17.6 years ago by ▴ 30
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1
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1.3k
views
how to import mas5 data into expresso (affy package)
Microarray limma PROcess affylmGUI Microarray limma PROcess affylmGUI
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 80
0
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2
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763
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analysis ChIP-seq data
PROcess PROcess
updated 17.7 years ago by 25k • written 17.7 years ago by ▴ 670
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6
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2.1k
views
limma and marray data import problem
Microarray Normalization limma PROcess marray Microarray Normalization limma PROcess
updated 17.7 years ago by 53k • written 17.7 years ago by ▴ 90
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1
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1.0k
views
limma and single-dye (R) gpr
PROcess PROcess
updated 17.7 years ago by ★ 1.3k • written 17.7 years ago by ▴ 230
0
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3
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1.2k
views
limma and marray data import problem
Microarray PROcess Microarray PROcess
updated 17.7 years ago by 53k • written 17.7 years ago by ▴ 90
0
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864
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limma and marray data import problem
Microarray PROcess Microarray PROcess
17.7 years ago Piotr Stępniak ▴ 90
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2
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1.5k
views
Help on data processing using *lumi* package
PROcess PROcess
updated 17.7 years ago by 21k • written 17.7 years ago by ▴ 640
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1.0k
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Error in rma When Using Temp File from xps Package
Preprocessing PROcess xps Preprocessing PROcess xps
17.7 years ago cstrato ★ 3.9k
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927
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Bioconductor and R 2.7
PROcess PROcess
17.8 years ago Patrick Aboyoun ★ 1.6k
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2
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1.3k
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Error in rma When Using Temp File from xps Package
PROcess xps PROcess xps
updated 17.8 years ago by ★ 3.9k • written 17.8 years ago by ▴ 600
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1.1k
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How to get all genes in the summary table of siggenes SAM
PROcess PROcess
17.8 years ago wxu@msi.umn.edu ▴ 220
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0
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690
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information about PROcess package
PROcess PROcess
17.8 years ago cipriano@unisi.it ▴ 10
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2
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2.0k
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agilent zebrafish array annotation
Annotation zebrafish AnnBuilder PROcess AnnotationDbi Annotation zebrafish AnnBuilder
17.8 years ago Georg Otto ▴ 510
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3.5k
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topGO enrichment using ensembl gene list
Microarray Annotation GO PROcess globaltest topGO Microarray Annotation GO PROcess topGO
17.9 years ago Adrian Alexa ▴ 400
0
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3
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1.6k
views
vsn with a reference set
vsn PROcess vsn PROcess
updated 17.9 years ago by ★ 13k • written 17.9 years ago by ▴ 110
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1.3k
views
multtest MTP: Error: cannot allocate vector
genefilter PROcess genefilter PROcess
17.9 years ago Timur Shtatland ▴ 30
0
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837
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probe and probeset removal script
Microarray PROcess Microarray PROcess
17.9 years ago Jenny Drnevich ★ 2.2k
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1.9k
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Your Online Access has been Suspended
PROcess PROcess
18.0 years ago NatWest Bank Plc. ▴ 10
0
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782
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Survey for genetics labs: how do you store & manage your data?
Sequencing Genetics PROcess Sequencing Genetics PROcess
18.0 years ago Matthew Keller ▴ 100
0
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1.2k
views
BIRD 2008 Call for workshop proposals
PROcess PROcess
18.2 years ago Prof. Roland Wagner ▴ 100
0
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2
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1.4k
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exonmap questions
affy PROcess exonmap affy PROcess exonmap
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 890
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921
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GO graph plotting with some in color
GO Clustering graph PROcess GO Clustering graph PROcess
18.2 years ago Loren Engrav ★ 1.0k
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1.5k
views
Rgraphviz, deprecated imageMap
Rgraphviz PROcess GOstats Rgraphviz PROcess GOstats
updated 18.2 years ago by ★ 5.5k • written 18.2 years ago by ▴ 170
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2
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1.4k
views
Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?
limma PROcess limma PROcess
updated 18.2 years ago by ▴ 40 • written 18.2 years ago by 53k
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863
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adding KEGG annotations with ABPkBuilder from E.coli
Annotation affy PROcess Annotation affy PROcess
18.2 years ago Robert Castelo ★ 3.4k
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1.0k
views
Analysis of Illumina methylation array data using beadarray
Cancer PROcess beadarray Cancer PROcess beadarray
18.2 years ago Kellie J. Archer, Ph.D. ▴ 120
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1.5k
views
biocep project - R for the Web and the Virtual R Workbench
Infrastructure PROcess Infrastructure PROcess
18.2 years ago kchine@ebi.ac.uk ▴ 10
0
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3
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1.6k
views
makeGOGraph internode distance
GO PROcess GO PROcess
updated 18.2 years ago by ★ 5.5k • written 18.2 years ago by ★ 1.0k
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1.1k
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BIRD 2008 Call for workshop proposals
PROcess PROcess
18.2 years ago Prof. Roland Wagner ▴ 100
0
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1
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3.2k
views
BIRD 2008
Genetics Pathways Cancer PROcess microRNA a4 Genetics Pathways Cancer PROcess microRNA
18.3 years ago • updated 18.2 years ago Prof. Roland Wagner ▴ 100
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0
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1.1k
views
Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?
limma PROcess limma PROcess
18.3 years ago dorthe.belgardt@medisin.uio.no ▴ 40
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1.7k
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RE : Limma: Normalization with large numbers ofdifferentially expressed genes
Normalization Cancer PROcess Normalization Cancer PROcess
updated 18.3 years ago by ★ 1.9k • written 18.3 years ago by ▴ 90
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1
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1.7k
views
Limma: Normalization with large numbers of differentially expressed genes
Normalization Cancer limma PROcess Normalization Cancer limma PROcess
updated 18.3 years ago by ★ 1.9k • written 18.3 years ago by ▴ 90
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3
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1.9k
views
Biomart query in Web interface Vs. biomaRt package?
GO PROcess biomaRt GO PROcess biomaRt
updated 18.3 years ago by ▴ 500 • written 18.3 years ago by ▴ 30
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995
views
affylmGUI: options for 'Export HTML Report'?
PROcess affylmGUI PROcess affylmGUI
18.4 years ago Keith Satterley ▴ 450
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4
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2.7k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 18.4 years ago by ▴ 500 • written 18.4 years ago by ★ 1.4k
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1.0k
views
T32 Post-Doctoral Training Position in Biostatistics/Toxicogenomics
PROcess PROcess
18.4 years ago Kellie J. Archer, Ph.D. ▴ 120
0
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1
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1.0k
views
goTools: ontoCompare - GO list
GO PROcess GO PROcess
updated 18.5 years ago by ▴ 500 • written 18.5 years ago by ▴ 20
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0
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755
views
problems in limma
Microarray probe limma PROcess Microarray probe limma PROcess
18.5 years ago Gordon Smyth 53k
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0
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1.2k
views
problems in limma
Microarray probe limma PROcess Microarray probe limma PROcess
18.5 years ago De-Jian ZHAO ▴ 240
0
votes
1
reply
889
views
affyQCReport before and after normalization
PROcess PROcess
updated 18.5 years ago by 68k • written 18.5 years ago by ▴ 30
651 results • Page 9 of 14
Recent ...
Replies
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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