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Can't reproduce assessment data included in affycomp package
Cancer affycomp PROcess safe Cancer affycomp PROcess safe
14.8 years ago Philippe Serhal ▴ 10
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6
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1.8k
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beadarray: Running BASH for 120 sections
PROcess beadarray PROcess beadarray
updated 14.8 years ago by ★ 6.6k • written 14.8 years ago by ▴ 220
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3.0k
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Script to save plots in Pdf format ( DNAcopy)
CGH PROcess CGH PROcess
updated 14.8 years ago by ▴ 750 • written 14.8 years ago by ▴ 280
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Rgraphviz windows version incompatible with current Graphviz
Rgraphviz PROcess Rgraphviz PROcess
14.9 years ago Kasper Daniel Hansen ★ 6.5k
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4
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5.3k
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Bioconductor with Affymetrix Mouse Gene 1.0 ST
Annotation cdf PROcess safe Annotation cdf PROcess safe
14.9 years ago M. Emily Merrill ▴ 20
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DESeq variance stabilisation and clustering
Genetics Clustering PROcess DESeq Genetics Clustering PROcess DESeq
updated 14.9 years ago by ▴ 30 • written 14.9 years ago by ▴ 20
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3.2k
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goseq KEGG testing?
Pathways GO PROcess Category goseq Pathways GO PROcess Category goseq
updated 14.9 years ago by ▴ 40 • written 14.9 years ago by ★ 2.0k
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1.2k
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BioC 2.8 New Package Submission Deadline - 3/23/2011
PROcess PROcess
14.9 years ago Chao-Jen Wong ▴ 580
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1
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1.0k
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Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6
Cancer RdbiPgSQL PROcess Cancer RdbiPgSQL PROcess
updated 15.0 years ago by ▴ 30 • written 15.0 years ago by 25k
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898
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Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6
RdbiPgSQL PROcess RdbiPgSQL PROcess
15.0 years ago Aszodi,Andras ▴ 30
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919
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Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6
RdbiPgSQL PROcess RdbiPgSQL PROcess
15.0 years ago Dan Tenenbaum ★ 8.2k
0
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953
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Enriched GO questions
Annotation GO annotate PROcess Annotation GO annotate PROcess
15.0 years ago Julie Zhu ★ 4.3k
0
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2
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1.1k
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package for protein MS analysis (SELDI-TOF)
Proteomics GO PROcess Proteomics GO PROcess
updated 15.0 years ago by 1.6k • written 15.0 years ago by ★ 4.1k
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1
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exporting mas5 data with xps
Annotation PROcess Annotation PROcess
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 30
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1.7k
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Job: Biostatistics/Bioinformatics, University of Cambridge
Genetics Arabidopsis thaliana PROcess Genetics Arabidopsis thaliana PROcess
15.0 years ago Krys Kelly ▴ 270
0
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1
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875
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exporting mas5 data with xps
PROcess PROcess
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 30
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13
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2.1k
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Problem with affy mas5 on Linux but not Windows...
PROcess PROcess
updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 150
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2.5k
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sorting FASTQ file by ID
PROcess PROcess
15.0 years ago Ramzi TEMANNI ▴ 160
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Cyclic loess
Normalization PROcess Normalization PROcess
15.1 years ago viritha kaza ▴ 580
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beadarray: how to create BeadStudio output after createBeadSummaryData
PROcess beadarray ArrayExpress PROcess beadarray ArrayExpress
15.1 years ago Cei Abreu-Goodger ▴ 830
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3
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1.4k
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About package beadarray
Normalization PROcess beadarray Normalization PROcess beadarray
updated 15.1 years ago by ★ 1.1k • written 15.1 years ago by ▴ 60
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2
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1.4k
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Procedure
Yeast PROcess Yeast PROcess
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 240
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6
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2.0k
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Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 15.1 years ago by 68k • written 15.1 years ago by ▴ 110
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0
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1.9k
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Bioconductor Digest, Vol 95, Issue 7
PROcess SRAdb PROcess SRAdb
15.1 years ago Jack Zhu ▴ 170
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2
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1.4k
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graph::join discards node and edge attributes
graph PROcess graph PROcess
updated 15.2 years ago by ★ 1.1k • written 15.2 years ago by ▴ 340
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1.5k
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EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
15.2 years ago W. A. Green ▴ 40
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1
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1.5k
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EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
updated 15.2 years ago by ▴ 40 • written 15.2 years ago by ▴ 310
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1
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1.3k
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Pairwise Comparison error
Prostate PROcess Prostate PROcess
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 40
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votes
1
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750
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Help for model.matrix() in microarray analysis
Microarray limma PROcess Microarray limma PROcess
updated 15.2 years ago by ★ 6.8k • written 15.2 years ago by ▴ 60
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2
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1.0k
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R/Bioconductor validation
PROcess PROcess
updated 15.2 years ago by 25k • written 15.2 years ago by ▴ 230
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1
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1.2k
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biocLite() partial install of pakcages issue
PROcess PROcess
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 100
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3
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2.8k
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avereps problem
probe limma PROcess probe limma PROcess
updated 15.3 years ago by 53k • written 15.3 years ago by ▴ 70
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0
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1.3k
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Agi4x44PreProcess - filter.probes function
Annotation GUI zebrafish probe PROcess Annotation GUI zebrafish probe PROcess
15.3 years ago Neel Aluru ▴ 460
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4
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1.9k
views
faster way to get differential calls from pileup?
SNP Sequencing PROcess SNP Sequencing PROcess
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 260
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3
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1.7k
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EBImage installs but won't load on Mac OS 10.6.4
GUI PROcess convert EBImage GUI PROcess convert EBImage
updated 15.3 years ago by ▴ 310 • written 15.3 years ago by ▴ 40
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7
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2.0k
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ecoli2.db
Annotation PROcess Annotation PROcess
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 120
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3
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1.3k
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Illumina QC using ShortRead
PROcess PROcess
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 30
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1.7k
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AgiMicroRna problems
miRNA Normalization FeatureExtraction PROcess microRNA AgiMicroRna miRNA Normalization
updated 15.4 years ago by ▴ 230 • written 15.4 years ago by ▴ 910
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8
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2.5k
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AgiMicroRna problems
Normalization PROcess microRNA AgiMicroRna Normalization PROcess microRNA AgiMicroRna
15.4 years ago Mark Cowley ▴ 910
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4
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1.7k
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about illumina data
Microarray PROcess Microarray PROcess
updated 15.4 years ago by 6.7k • written 15.4 years ago by ▴ 90
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1.4k
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Bioinformatician/Software Engineer position available at Umass Medical School
Genetics GO Cancer PROcess Genetics GO Cancer PROcess
15.4 years ago Julie Zhu ★ 4.3k
0
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0
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1.3k
views
Limma script - Opinions requested
Annotation Bayesian limma PROcess Annotation Bayesian limma PROcess
15.4 years ago Orfe, Lisa ▴ 20
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1
reply
1.3k
views
Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
15.4 years ago Gordon Smyth 53k
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1.3k
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
15.4 years ago Orfe, Lisa ▴ 20
2
votes
3
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2.7k
views
How to get position for each gene ID/gene symbol instead of position for each transcript
Organism PROcess biomaRt GenomicFeatures Organism PROcess biomaRt GenomicFeatures
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ★ 1.0k
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4
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1.5k
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Affy ST 1.0 gene chip background probes cut off set up
affy PROcess xps affy PROcess xps
updated 15.5 years ago by ★ 3.9k • written 15.5 years ago by ▴ 40
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0
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2.2k
views
How to do GO enrichment analysis with GOstats while the gene set with no p values of gene difference expression
Transcription PROcess GOstats cycle Transcription PROcess GOstats cycle
15.5 years ago zhidong yuan ▴ 10
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1
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1.7k
views
write.XStringView/write.XStringSet highly inefficient (solved)
Cancer BSgenome PROcess GLAD BSgenome Cancer BSgenome PROcess GLAD BSgenome
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 550
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2
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7.5k
views
Error in Heatmap: Could not find function "heatmap.2"
PROcess marray PROcess marray
updated 15.5 years ago by ▴ 830 • written 15.5 years ago by ▴ 40
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1
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871
views
write.XStringView/write.XStringSet highly inefficient
PROcess PROcess
updated 15.5 years ago by 25k • written 15.5 years ago by ▴ 550
651 results • Page 6 of 14
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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
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Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
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