Showing : PROcess • reset
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flowQ on WinXP: Error in matrix for dimnames
PROcess flowQ PROcess flowQ
updated 15.5 years ago by ▴ 340 • written 15.6 years ago by ▴ 20
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Error compiling GeneR package
PROcess GeneR PROcess GeneR
15.6 years ago Andrés Rogers ▴ 20
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900
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Agi4x44 PreProcessing for GSE11682 Data Set
PROcess PROcess
15.6 years ago Sathe, Tejas ▴ 20
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781
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get BP GOterm from geneID
GO PROcess GO PROcess
15.6 years ago Yuan Jian ▴ 250
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6
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1.9k
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xps and unifilter; Error: UnitID not found; error in function ‘ExportData’
PROcess PROcess
updated 15.6 years ago by ★ 3.9k • written 15.6 years ago by ▴ 170
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959
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expression profile
PROcess PROcess
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 270
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1
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1.8k
views
TLDA data
Clustering Cancer PROcess cycle HTqPCR Clustering Cancer PROcess cycle HTqPCR
updated 15.6 years ago by ★ 2.0k • written 15.7 years ago by ▴ 40
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xps - creating ROOT scheme fi les
Annotation Preprocessing cdf PROcess oligo xps Annotation Preprocessing cdf PROcess xps
15.6 years ago Benilton Carvalho ★ 4.3k
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818
views
Redirection of Silencing Targets by Adenosine-to-Inosine Editing of miRNAs
PROcess PROcess
updated 15.7 years ago by ★ 2.0k • written 15.7 years ago by ▴ 870
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1
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1.1k
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R: R: Redirection of Silencing Targets by Adenosine-to-Inosine Editing of miRNAs
PROcess PROcess
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 870
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1
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984
views
R: Redirection of Silencing Targets by Adenosine-to-Inosine Editing of miRNAs
PROcess PROcess
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 870
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1.3k
views
R: Validated miRNAs revisited
PROcess PROcess
updated 15.8 years ago by ★ 3.4k • written 15.8 years ago by ▴ 870
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1
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1.4k
views
segfault with rmaMicroRna in AgiMicroRna package
PROcess AgiMicroRna PROcess AgiMicroRna
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ▴ 360
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2.2k
views
How to normalize Illumina bead-level data ?
SNP Normalization GO PROcess beadarraySNP SNP Normalization GO PROcess beadarraySNP
15.8 years ago Jonas Mandel ▴ 10
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3
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1.2k
views
custom Affymetrix
Clustering PROcess Clustering PROcess
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 20
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2
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3.0k
views
NA/NaN/Inf in foreign function call in mas5calls function
probe affy PROcess probe affy PROcess
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 10
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2
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4.0k
views
using Blat in R
Alignment PROcess Alignment PROcess
updated 15.8 years ago by ★ 1.9k • written 15.8 years ago by ▴ 250
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1
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1.3k
views
readMicroRnaAFE function in AgiMicroR package
miRNA Microarray Annotation PROcess miRNA Microarray Annotation PROcess
updated 15.9 years ago by ▴ 360 • written 15.9 years ago by ▴ 360
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1
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1.4k
views
filtering in GSEABase package
GO hgu95av2 mouse4302 PROcess Category GO hgu95av2 mouse4302 PROcess Category
updated 15.9 years ago by ▴ 610 • written 15.9 years ago by ▴ 190
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Favor: ChIPpeakAnno
PROcess PROcess
15.9 years ago Julie Zhu ★ 4.3k
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4
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1.9k
views
Reg: T-statistic using limma
PROcess PROcess
15.9 years ago Rohit Farmer ▴ 170
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1.5k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO
15.9 years ago Dick Beyer ★ 1.4k
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2
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1.7k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO
updated 15.9 years ago by 21k • written 15.9 years ago by ★ 1.4k
0
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0
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1.3k
views
Comparing gene set enrichment lists / GO terms
Microarray GO PROcess Microarray GO PROcess
16.0 years ago michael watson IAH-C ★ 3.4k
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997
views
Updated new package submission process
Cancer PROcess Cancer PROcess
16.0 years ago Martin Morgan 25k
0
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888
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Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)
Annotation GO Cancer ChipName probe genefilter PROcess Annotation GO Cancer ChipName
16.0 years ago Suyog Pol ▴ 40
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1
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1.5k
views
Question regarding Installation of annotation package which was built using SQLforge
Annotation GO ChipName probe PROcess Annotation GO ChipName probe PROcess
updated 16.0 years ago by ★ 7.4k • written 16.0 years ago by ▴ 40
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1
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1.4k
views
generate a CDF file from Affymetrix ST array 1.1 library
cdf probe PROcess cdf probe PROcess
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 160
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3
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1.7k
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
GO Biobase annotate PROcess GOstats Category AnnotationDbi GO Biobase annotate PROcess
updated 16.1 years ago by ★ 7.4k • written 16.1 years ago by ★ 3.4k
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6
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2.1k
views
Regarding KEGGgraph
Pathways Network PROcess Pathways Network PROcess
updated 16.1 years ago by ★ 13k • written 16.1 years ago by ▴ 270
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622
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troubles with writeTpmap {affxparser} - backconverted BPMAP fails to process
PROcess PROcess
16.1 years ago Ann Loraine ▴ 110
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0
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975
views
need output to contain probe x, y coordinates on array - AffyTiling
Microarray probe PROcess genomes Microarray probe PROcess genomes
16.1 years ago Charles Danko ▴ 40
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1.1k
views
Genominator upgraded in the release branch
PROcess Genominator PROcess Genominator
16.1 years ago Kasper Daniel Hansen ★ 6.5k
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1.0k
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need output to contain probe x, y coordinates on array - AffyTiling
probe PROcess genomes probe PROcess genomes
16.1 years ago Ann Loraine ▴ 110
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974
views
troubles with writeTpmap {affxparser} - backconverted BPMAP fails to process
PROcess convert PROcess convert
16.1 years ago Ann Loraine ▴ 110
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1
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2.4k
views
Help on matrix design in Limma - paired samples and two conditions
Cancer limma PROcess Cancer limma PROcess
updated 16.1 years ago by ▴ 350 • written 16.1 years ago by ▴ 10
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9
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3.8k
views
BLAST search sequence for species ID from R?
Biostrings PROcess Biostrings PROcess
updated 16.2 years ago by ▴ 550 • written 16.2 years ago by ▴ 40
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13
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2.6k
views
problem with data processing in R
PROcess GLAD PROcess GLAD
updated 16.2 years ago by ★ 1.7k • written 16.2 years ago by ▴ 170
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1.2k
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choosing explanatory variables for linear model in limma
GO limma PROcess GO limma PROcess
16.2 years ago Yannick Wurm ▴ 220
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2
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1.3k
views
Question on PROcess package
PROcess PROcess
updated 16.2 years ago by ▴ 20 • written 16.2 years ago by ▴ 350
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1.0k
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Question on PROcess package
PROcess PROcess
16.2 years ago Farida Mostajabi ▴ 20
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0
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807
views
End of the line of GOstats: making sense of the hypergeometric test results now
GO PROcess GOstats GO PROcess GOstats
16.2 years ago James W. MacDonald 68k
0
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1
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1.5k
views
Sample size estimation for independent validation set
Microarray Classification PROcess Microarray Classification PROcess
updated 16.2 years ago by ▴ 110 • written 16.2 years ago by ▴ 10
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3
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2.0k
views
R: Can an R script be run through a cron job ?
miRNA PROcess biomaRt miRNA PROcess biomaRt
updated 16.2 years ago by ★ 1.3k • written 16.2 years ago by ▴ 870
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1
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1.4k
views
Problem with rma function in xps package with Affymetrix Human Gene 1.0 ST Array
Preprocessing PROcess xps Preprocessing PROcess xps
updated 16.3 years ago by ★ 3.9k • written 16.3 years ago by ▴ 170
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1.2k
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Student project at European Bioinformatics Institute
Microarray Annotation Visualization PROcess Microarray Annotation Visualization PROcess
16.3 years ago Gabriella Rustici ▴ 60
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1.6k
views
Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing Genetics Classification Cancer PROcess Sequencing Genetics Classification
16.3 years ago Reek, J. ▴ 10
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0
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705
views
about Rgraphviz
Rgraphviz PROcess Rgraphviz PROcess
16.3 years ago Jenny Drnevich ★ 2.0k
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0
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1.4k
views
Job advertisement
Transcription Sequencing Microarray Normalization Pathways PROcess Transcription Sequencing
16.4 years ago Alexandre Kuhn ▴ 60
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0
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598
views
What should be in databases.txt for exonmap?
PROcess PROcess
16.4 years ago Peng Yu ▴ 950
651 results • Page 7 of 14
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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
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