Showing : PROcess • reset
0
votes
4
replies
1.8k
views
use of duplicateCorrelation in Limma with agilent one-color arrays
limma PROcess limma PROcess
updated 14.0 years ago by 53k • written 14.0 years ago by ▴ 150
0
votes
13
replies
3.4k
views
How to plot NGS data?
GO BSgenome geneplotter PROcess BSgenome genomes GO BSgenome geneplotter PROcess genomes
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 30
0
votes
11
replies
3.0k
views
Rsubread/Rsamtools mappings outside of chromosome ranges
PROcess Rsamtools Rsubread TCC PROcess Rsamtools Rsubread TCC
14.0 years ago Thomas Girke ★ 1.7k
0
votes
1
reply
978
views
Is anyone using affylmGUI for Affy Exon 1.0 analysis?
Normalization cdf affy limma PROcess Normalization cdf affy limma PROcess
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 50
0
votes
7
replies
1.9k
views
Limma question_Intra-Spot Correlation Question
Normalization limma PROcess convert Normalization limma PROcess convert
updated 14.0 years ago by 53k • written 14.0 years ago by ▴ 30
0
votes
1
reply
1.8k
views
refseq to genesymbol with BiomaRt - problem occurs
GO hgu133plus2 PROcess convert biomaRt GO hgu133plus2 PROcess convert biomaRt
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 240
0
votes
2
replies
1.5k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 630
0
votes
1
reply
887
views
[XPS] Background computation on single CEL file
PROcess xps PROcess xps
updated 14.0 years ago by ★ 3.9k • written 14.0 years ago by ▴ 50
0
votes
2
replies
1.2k
views
a question about trimLRPatterns?
PROcess PROcess
updated 14.0 years ago by ▴ 590 • written 14.0 years ago by ★ 2.0k
0
votes
4
replies
2.9k
views
genotyping output files
PROcess SNPchip crlmm PROcess SNPchip crlmm
14.1 years ago Rafiq S. ▴ 20
0
votes
1
reply
2.9k
views
Hu Gene 1.0 ST v1 microarray processing and analysis
Microarray Annotation PROcess xps Microarray Annotation PROcess xps
updated 14.1 years ago by 68k • written 14.1 years ago by ▴ 10
0
votes
0
replies
1.6k
views
lumi and 450k control probe files
probe PROcess lumi probe PROcess lumi
14.1 years ago Oliver Hofmann ▴ 50
0
votes
1
reply
1.6k
views
Analysis of Omni Express / Omni Express FFPE chips
SNP PROcess ffpe SNP PROcess ffpe
updated 14.1 years ago by ★ 6.8k • written 14.1 years ago by ★ 13k
0
votes
0
replies
1.2k
views
Bioconductor Digest, Vol 106, Issue 21
SNP Microarray VariantAnnotation Annotation cdf probe affy limma PROcess oligo xps SNP
14.1 years ago Jing Huang ▴ 380
0
votes
1
reply
1.1k
views
problems with pd.genomewidesnp.6
PROcess PROcess
updated 14.1 years ago by 68k • written 14.1 years ago by ▴ 60
0
votes
0
replies
1.3k
views
Fwd: problems with pd.genomewidesnp.6
SNP Annotation PROcess SNP Annotation PROcess
14.1 years ago Benilton Carvalho ★ 4.3k
0
votes
1
reply
1.8k
views
Summarising Probe Sets for Agilent 4x44 Arrays
Clustering probe PROcess Clustering probe PROcess
updated 14.2 years ago by ▴ 80 • written 14.2 years ago by ▴ 10
0
votes
3
replies
3.9k
views
Trying to use the liftOver function from the rtracklayer package in R 2.14.0
PROcess rtracklayer bumphunter PROcess rtracklayer bumphunter
updated 14.2 years ago by ★ 11k • written 14.2 years ago by ★ 1.1k
0
votes
0
replies
1.4k
views
Job: Biostatistician/Bioinformatician, University of Cambridge, UK
Genetics Arabidopsis thaliana PROcess Genetics Arabidopsis thaliana PROcess
14.2 years ago Krys Kelly ▴ 270
0
votes
0
replies
889
views
package NEWS, README, and INSTALL files available on web site
GO PROcess GO PROcess
14.2 years ago Dan Tenenbaum ★ 8.2k
0
votes
1
reply
1.3k
views
permutation loop
PROcess PROcess
updated 14.2 years ago by ▴ 170 • written 14.2 years ago by ▴ 180
0
votes
0
replies
1.3k
views
diagnosing problems with processing microarray data using lumi package
Microarray probe PROcess convert lumi Microarray probe PROcess convert lumi
14.2 years ago Juliet Hannah ▴ 360
0
votes
2
replies
1.1k
views
installation problems with goseq
PROcess PROcess
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 20
0
votes
1
reply
1.4k
views
goSeq error
Cancer PROcess edgeR goseq ASSIGN Cancer PROcess edgeR goseq ASSIGN
14.3 years ago Matthew Young ▴ 50
0
votes
4
replies
2.0k
views
edgeR design matrix
PROcess edgeR PROcess edgeR
updated 14.3 years ago by 53k • written 14.3 years ago by ▴ 50
0
votes
0
replies
1.6k
views
cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
PROcess DNAcopy cghMCR PROcess DNAcopy cghMCR
14.3 years ago viritha kaza ▴ 580
0
votes
0
replies
1.3k
views
R/Bioconductor package to analyze illumina iscan genotyping data
SNP PROcess SNP PROcess
14.3 years ago John Clark ▴ 10
0
votes
6
replies
2.9k
views
DESEQ problem
PROcess PROcess
14.4 years ago Dawei Li ▴ 50
0
votes
4
replies
1.5k
views
[XPS] integrating data processed outside of XPS into the tree
PROcess xps frma PROcess xps frma
updated 14.4 years ago by ★ 3.9k • written 14.4 years ago by ▴ 50
0
votes
1
reply
1.4k
views
HTqPCR
qPCR PROcess HTqPCR qPCR PROcess HTqPCR
14.4 years ago Heidi Dvinge ★ 2.0k
0
votes
2
replies
1.7k
views
SPIA package
PROcess SPIA PROcess SPIA
14.4 years ago Jing Huang ▴ 380
0
votes
0
replies
1.2k
views
FW: normalization one color microarrays
Normalization hgug4112a PROcess Agi4x44PreProcess Normalization hgug4112a PROcess
14.4 years ago Paz Tapia Ramirez ▴ 150
0
votes
0
replies
1.3k
views
Question about 'updateCel' from package 'affxparser'
cdf PROcess affxparser cdf PROcess affxparser
14.4 years ago Henrik Bengtsson ★ 2.4k
0
votes
1
reply
1.4k
views
Illumina CytoSNP-12 CDF file for crlmm
cdf PROcess cdf PROcess
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 10
2
votes
6
replies
11k
views
GEOquery: how to extract experimental data? (confused)
PROcess GEOquery PROcess GEOquery
updated 14.5 years ago by ▴ 60 • written 14.5 years ago by ★ 1.9k
0
votes
7
replies
2.2k
views
EBS volumes with the Bioconductor AMI: how to change default behaviour
PROcess BRAIN PROcess BRAIN
14.5 years ago Dan Tenenbaum ★ 8.2k
0
votes
2
replies
3.3k
views
Question about quantile normalization
Microarray Normalization limma PROcess Microarray Normalization limma PROcess
updated 14.5 years ago by ▴ 10 • written 14.5 years ago by ▴ 10
0
votes
0
replies
946
views
Question about 'updateCel' from package 'affxparser'
cdf PROcess cdf PROcess
14.5 years ago Steve Pederson ▴ 170
0
votes
0
replies
1.3k
views
Limma - batch issues
miRNA Microarray limma PROcess AgiMicroRna miRNA Microarray limma PROcess AgiMicroRna
14.6 years ago Segal, Corrinne ▴ 40
0
votes
1
reply
1.7k
views
Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
updated 14.6 years ago by ▴ 590 • written 14.6 years ago by ★ 2.3k
0
votes
4
replies
1.7k
views
IRanges: Request for a "step" argument in runsum
Coverage Annotation Cancer PROcess IRanges genomes Coverage Annotation Cancer PROcess
updated 14.6 years ago by 16k • written 14.6 years ago by ▴ 100
0
votes
1
reply
1.0k
views
IRanges: Request for a "step" argument in runsum
Cancer PROcess IRanges genomes Cancer PROcess IRanges genomes
updated 14.6 years ago by ★ 11k • written 14.6 years ago by 16k
0
votes
2
replies
966
views
ALL package license
PROcess PROcess
14.6 years ago Pierre-Yves ▴ 120
0
votes
9
replies
2.3k
views
removing packages from the workspace - is this ok?
Annotation PROcess Annotation PROcess
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ★ 1.9k
0
votes
3
replies
1.7k
views
XPS crashes
PROcess xps PROcess xps
14.7 years ago Clara Pons ▴ 30
0
votes
1
reply
1.3k
views
RMA (affy) followed by SAM (samr)
rae230a rae230b cdf affy PROcess rae230a rae230b cdf affy PROcess
updated 14.7 years ago by ▴ 900 • written 14.7 years ago by ▴ 30
0
votes
0
replies
1.5k
views
empty go terms with bioMart
GO Yeast probe PROcess biomaRt GO Yeast probe PROcess biomaRt
14.7 years ago chawla ▴ 190
0
votes
1
reply
1.2k
views
Rgraphviz windows version incompatible with current Graphviz
Rgraphviz PROcess GLAD Rgraphviz PROcess GLAD
updated 14.8 years ago by 25k • written 14.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
question about topTable in limma
limma PROcess limma PROcess
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 80
0
votes
0
replies
1.3k
views
Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
14.8 years ago Harris A. Jaffee ▴ 590
651 results • Page 5 of 14
Recent ...
Replies
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
Awards • All
Supporter to fl ▴ 20
Popular Question to James W. MacDonald 68k
Popular Question to rcavalca ▴ 140
Popular Question to James Aiden • 0
Popular Question to shepherl 4.3k
Locations • All
United States, 31 minutes ago
The city by the bay, 40 minutes ago
Australia, 41 minutes ago
Barcelona, Spain, 43 minutes ago
United States, 53 minutes ago
Traffic: 1333 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6