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PWMEnrich
•
reset
0
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0
replies
656
views
How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
5.4 years ago
intregen
• 0
0
votes
0
replies
747
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.1 years ago
gdeniz
• 0
0
votes
1
reply
810
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.2 years ago
amanda.joy.price
• 0
0
votes
0
replies
695
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.3 years ago
prp291
• 0
0
votes
1
reply
1.9k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.7 years ago by
Ou, Jianhong
★ 1.3k • written 7.7 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.0k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
7.8 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
1.8k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.2 years ago by
Robert Stojnic
▴ 50 • written 8.2 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.2 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.4k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.5 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.2k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 8.6 years ago by
Robert Stojnic
▴ 50 • written 8.6 years ago by
elliott77
• 0
2
votes
1
reply
1.1k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 8.8 years ago by
Robert Stojnic
▴ 50 • written 8.8 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.4k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
8.8 years ago
oliwindram
▴ 10
0
votes
5
replies
2.5k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 9.7 years ago by
Robert Stojnic
▴ 80 • written 9.7 years ago by
deepti anand
▴ 50
0
votes
0
replies
808
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
9.9 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.6k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 10.5 years ago by
Robert Stojnic
▴ 80 • written 10.5 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.2k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 10.7 years ago by
Robert Stojnic
▴ 50 • written 10.7 years ago by
Guest User
★ 13k
16 results • Page
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Comment: How to run allelic imbalance in apeglm
by
parayod376
• 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process")
by
James W. MacDonald
66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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