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PWMenrich
•
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963
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
7.1 years ago
intregen
• 0
0
votes
0
replies
1.1k
views
makeBackground error message "Sequence only contain N's"
pwmenrich
7.8 years ago
gdeniz
• 0
0
votes
1
reply
1.2k
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
8.0 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
1.1k
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
8.1 years ago
prp291
• 0
0
votes
1
reply
2.6k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 9.5 years ago by
Ou, Jianhong
★ 1.4k • written 9.5 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.4k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
9.6 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.5k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.9 years ago by
Robert Stojnic
▴ 50 • written 9.9 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.7k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
10.0 years ago
enricoferrero
▴ 680
0
votes
3
replies
2.0k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
10.3 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.7k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 10.3 years ago by
Robert Stojnic
▴ 50 • written 10.3 years ago by
elliott77
• 0
2
votes
1
reply
1.5k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 10.5 years ago by
Robert Stojnic
▴ 50 • written 10.5 years ago by
enricoferrero
▴ 680
1
vote
3
replies
2.0k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
10.5 years ago
oliwindram
▴ 10
0
votes
5
replies
3.3k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 11.5 years ago by
Robert Stojnic
▴ 80 • written 11.5 years ago by
deepti anand
▴ 50
0
votes
0
replies
1.1k
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
11.7 years ago
enricoferrero
▴ 680
0
votes
8
replies
2.3k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 12.2 years ago by
Robert Stojnic
▴ 80 • written 12.2 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.6k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 12.5 years ago by
Robert Stojnic
▴ 50 • written 12.5 years ago by
Guest User
★ 13k
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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