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PWMenrich
•
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959
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
7.1 years ago
intregen
• 0
0
votes
0
replies
1.1k
views
makeBackground error message "Sequence only contain N's"
pwmenrich
7.8 years ago
gdeniz
• 0
0
votes
1
reply
1.2k
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
7.9 years ago
amanda.joy.price
▴ 10
0
votes
0
replies
1.1k
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
8.1 years ago
prp291
• 0
0
votes
1
reply
2.6k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 9.5 years ago by
Ou, Jianhong
★ 1.3k • written 9.5 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.4k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
9.5 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
2.5k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.9 years ago by
Robert Stojnic
▴ 50 • written 9.9 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.7k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
9.9 years ago
enricoferrero
▴ 680
0
votes
3
replies
2.0k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
10.2 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.7k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 10.3 years ago by
Robert Stojnic
▴ 50 • written 10.3 years ago by
elliott77
• 0
2
votes
1
reply
1.5k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 10.5 years ago by
Robert Stojnic
▴ 50 • written 10.5 years ago by
enricoferrero
▴ 680
1
vote
3
replies
2.0k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
10.5 years ago
oliwindram
▴ 10
0
votes
5
replies
3.3k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 11.4 years ago by
Robert Stojnic
▴ 80 • written 11.4 years ago by
deepti anand
▴ 50
0
votes
0
replies
1.1k
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
11.6 years ago
enricoferrero
▴ 680
0
votes
8
replies
2.3k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 12.2 years ago by
Robert Stojnic
▴ 80 • written 12.2 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.6k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 12.4 years ago by
Robert Stojnic
▴ 50 • written 12.4 years ago by
Guest User
★ 13k
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a2a2ddrhaa
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For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
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This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
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by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
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by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
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