Showing : Pathview • reset
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Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 10.2 years ago by ★ 1.6k • written 10.2 years ago by ▴ 130
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4
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1.9k
views
Argument gene.data for the correct implementation of fuction pathview of the pathview package
mroast limma pathview pathway analysis
updated 10.4 years ago by ★ 1.6k • written 10.4 years ago by ▴ 840
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3
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1.6k
views
bug report in pathview
pathview pathview
updated 10.8 years ago by • 0 • written 12.0 years ago by ★ 13k
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0
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1.9k
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GAGE/Pathview analysis data preparation
GO gage pathview GO gage pathview
11.1 years ago Luo Weijun ★ 1.6k
0
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1
reply
1.7k
views
Doubts regarding Pathview
Annotation pathview Annotation pathview
written 11.1 years ago by ★ 1.6k
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1.4k
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Pathview hickups
pathview pathview
11.1 years ago Luo Weijun ★ 1.6k
0
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0
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1.5k
views
ISMB talks: Pathview for pathway-based data integration and visualization
Pathways Visualization pathview Pathways Visualization pathview
11.2 years ago Luo Weijun ★ 1.6k
0
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1
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2.0k
views
An. Gambie RNA-Seq differential expression using gage and pathview
Transcription Annotation Normalization gage pathview Transcription Annotation Normalization
updated 11.2 years ago by ▴ 20 • written 11.2 years ago by ★ 1.6k
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1.2k
views
Pathview plot split by experiment condition
gage pathview gage pathview
11.3 years ago Luo Weijun ★ 1.6k
0
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2.4k
views
Pathview question
Network convert pathview Network convert pathview
11.4 years ago Luo Weijun ★ 1.6k
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2.0k
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pathview with tomato and minor species
Pathways pathview Pathways pathview
11.5 years ago Luo Weijun ★ 1.6k
0
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0
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2.2k
views
GAGE/Pathview RNA-Seq Workflows: reference genome issue
Pathways pathview Pathways pathview
11.5 years ago Luo Weijun ★ 1.6k
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2.4k
views
parsing discrete colors in pathview KEGG
SIM pathview SIM pathview
11.5 years ago Luo Weijun ★ 1.6k
0
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3
replies
2.5k
views
pathview - plotting multiple samples in the same graph?
Pathways GO pathview Pathways GO pathview
11.5 years ago Peter Davidsen ▴ 210
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5
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2.1k
views
How does pathview deal with enzyme with several coding genes?
RNASeq Organism pathview RNASeq Organism pathview
11.6 years ago 刘鹏飞 ▴ 80
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2.4k
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Pathview with minor species
Microarray Annotation GO Bacillus subtilis gage pathview Microarray Annotation GO gage
11.6 years ago Luo Weijun ★ 1.6k
0
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0
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1.5k
views
Pathview with minor species
Microarray Annotation Bacillus subtilis gage pathview Microarray Annotation gage pathview
11.6 years ago Luo Weijun ★ 1.6k
0
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0
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1.9k
views
pathview vectorized output?
Pathways graph pathview Pathways graph pathview
11.6 years ago Luo Weijun ★ 1.6k
0
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0
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2.0k
views
R pathview and mouse
Category pathview Category pathview
11.7 years ago Luo Weijun ★ 1.6k
0
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1
reply
15k
views
operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 11.7 years ago by ★ 1.6k • written 11.7 years ago by ★ 13k
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1
reply
1.7k
views
Can gage not use large gene sets for pathway analysis?
Pathways gage pathview Pathways gage pathview
updated 11.8 years ago by ★ 1.6k • written 11.8 years ago by ★ 13k
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0
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3.4k
views
DESeq2 with GAGE
Pathways cycle gage DESeq2 pathview Pathways cycle gage DESeq2 pathview
11.8 years ago Luo Weijun ★ 1.6k
0
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2
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3.4k
views
pathview -- ID Problem?
graph pathview graph pathview
updated 11.8 years ago by ▴ 40 • written 11.8 years ago by ★ 1.6k
0
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1
reply
2.7k
views
pathview -- ID Problem?
Annotation pathview Annotation pathview
updated 11.9 years ago by ★ 1.6k • written 11.9 years ago by ★ 13k
1
vote
0
replies
2.0k
views
Pathview and GAGE now work with essentially all KEGG species
Visualization gage pathview Visualization gage pathview
11.9 years ago Luo Weijun ★ 1.6k
0
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3
replies
2.0k
views
GAGE and PATHVIEW packages
gage pathview gage pathview
updated 11.9 years ago by ★ 1.6k • written 11.9 years ago by ▴ 150
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1
reply
2.3k
views
pathview
Organism convert pathview Organism convert pathview
updated 11.9 years ago by ★ 1.6k • written 11.9 years ago by ▴ 70
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0
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1.9k
views
Pathview question
KEGGREST pathview KEGGREST pathview
11.9 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
2.4k
views
Pathview - Problem with PNG output
Pathways graph pathview Pathways graph pathview
updated 12.0 years ago by ★ 1.6k • written 12.0 years ago by ▴ 150
0
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2
replies
2.0k
views
Pathview with non-KEGG organism
Annotation pathview Annotation pathview
updated 12.0 years ago by ★ 1.6k • written 12.0 years ago by ▴ 150
0
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3
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1.6k
views
pathview puzzle
PROcess pathview PROcess pathview
updated 12.0 years ago by ★ 1.6k • written 12.0 years ago by ▴ 60
0
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0
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1.9k
views
Change enzyme code (EC) into gene symbol
Pathways graph pathview Pathways graph pathview
12.0 years ago Luo Weijun ★ 1.6k
0
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5
replies
2.5k
views
pathview puzzle
Pathways pathview Pathways pathview
12.0 years ago Oleg Moskvin ▴ 60
0
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4
replies
3.9k
views
Pathview for global and overview maps Re: using pathview about hsa01100
Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview
updated 12.1 years ago by ▴ 230 • written 12.1 years ago by ★ 1.6k
0
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0
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1.2k
views
pathview, when multiple entrzgene ids were mapper to the same node in kegg pathway
pathview pathview
12.1 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
3.1k
views
Pathview with non-KEGG organisms?
Microbiome Pathways GO Visualization Organism graph gage pathview Microbiome Pathways GO
12.1 years ago Luo Weijun ★ 1.6k
0
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0
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2.5k
views
Pathview with non-KEGG organisms?
Pathways Organism pathview Pathways Organism pathview
12.1 years ago Luo Weijun ★ 1.6k
0
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0
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3.5k
views
Pathview+GAGE workflow on RNA-seq data pathway analysis and visualization (was: Pathview published in Bioinformatics)
Annotation Pathways Visualization graph PROcess gage pathview Annotation Pathways graph
12.1 years ago Luo Weijun ★ 1.6k
0
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0
replies
1.6k
views
Pathview published in Bioinformatics
Visualization graph pathview Visualization graph pathview
12.1 years ago km ▴ 100
0
votes
0
replies
1.4k
views
Pathview: all NA's in the mapped gene data
pathview pathview
12.2 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.1k
views
Query regarding "pathview"
pathview pathview
12.2 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.1k
views
Problem running pathview due to broken XML package
GO pathview GO pathview
12.2 years ago Luo Weijun ★ 1.6k
0
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0
replies
2.2k
views
info on pathview
graph PROcess pathview graph PROcess pathview
12.2 years ago Luo Weijun ★ 1.6k
0
votes
4
replies
1.7k
views
Pathview published in Bioinformatics
Visualization pathview Visualization pathview
12.2 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.4k
views
pathview
Pathways graph pathview Pathways graph pathview
12.2 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.2k
views
Pathview package for pathway based data integration and visualization
Visualization pathview Visualization pathview
12.4 years ago Luo Weijun ★ 1.6k
146 results • Page 3 of 3
Recent ...
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Comment: EuroBioC2024 abstract submission is open! by Finnianfly • 0
What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…
Comment: Length of 'dimnames' [1] not equal to array extent by Francesco Silvestro • 0
Resolved the error message!
Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design by Gordon Smyth 52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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