Showing : Pathview • reset
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Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 10.6 years ago by ★ 1.6k • written 10.6 years ago by ▴ 130
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4
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2.1k
views
Argument gene.data for the correct implementation of fuction pathview of the pathview package
mroast limma pathview pathway analysis
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by ▴ 840
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3
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1.7k
views
bug report in pathview
pathview pathview
updated 11.2 years ago by • 0 • written 12.4 years ago by ★ 13k
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0
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1.9k
views
GAGE/Pathview analysis data preparation
GO gage pathview GO gage pathview
11.5 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
1.8k
views
Doubts regarding Pathview
Annotation pathview Annotation pathview
written 11.5 years ago by ★ 1.6k
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1.5k
views
Pathview hickups
pathview pathview
11.5 years ago Luo Weijun ★ 1.6k
0
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0
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1.6k
views
ISMB talks: Pathview for pathway-based data integration and visualization
Pathways Visualization pathview Pathways Visualization pathview
11.5 years ago Luo Weijun ★ 1.6k
0
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1
reply
2.1k
views
An. Gambie RNA-Seq differential expression using gage and pathview
Transcription Annotation Normalization gage pathview Transcription Annotation Normalization
updated 11.6 years ago by ▴ 20 • written 11.6 years ago by ★ 1.6k
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1.3k
views
Pathview plot split by experiment condition
gage pathview gage pathview
11.7 years ago Luo Weijun ★ 1.6k
0
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0
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2.5k
views
Pathview question
Network convert pathview Network convert pathview
11.8 years ago Luo Weijun ★ 1.6k
0
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2.1k
views
pathview with tomato and minor species
Pathways pathview Pathways pathview
11.9 years ago Luo Weijun ★ 1.6k
0
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0
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2.3k
views
GAGE/Pathview RNA-Seq Workflows: reference genome issue
Pathways pathview Pathways pathview
11.9 years ago Luo Weijun ★ 1.6k
0
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0
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2.6k
views
parsing discrete colors in pathview KEGG
SIM pathview SIM pathview
11.9 years ago Luo Weijun ★ 1.6k
0
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3
replies
2.6k
views
pathview - plotting multiple samples in the same graph?
Pathways GO pathview Pathways GO pathview
11.9 years ago Peter Davidsen ▴ 210
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5
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2.3k
views
How does pathview deal with enzyme with several coding genes?
RNASeq Organism pathview RNASeq Organism pathview
11.9 years ago 刘鹏飞 ▴ 80
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2.5k
views
Pathview with minor species
Microarray Annotation GO Bacillus subtilis gage pathview Microarray Annotation GO gage
12.0 years ago Luo Weijun ★ 1.6k
0
votes
0
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1.6k
views
Pathview with minor species
Microarray Annotation Bacillus subtilis gage pathview Microarray Annotation gage pathview
12.0 years ago Luo Weijun ★ 1.6k
0
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0
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2.0k
views
pathview vectorized output?
Pathways graph pathview Pathways graph pathview
12.0 years ago Luo Weijun ★ 1.6k
0
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0
replies
2.1k
views
R pathview and mouse
Category pathview Category pathview
12.0 years ago Luo Weijun ★ 1.6k
0
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1
reply
15k
views
operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 12.1 years ago by ★ 1.6k • written 12.1 years ago by ★ 13k
0
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1
reply
1.8k
views
Can gage not use large gene sets for pathway analysis?
Pathways gage pathview Pathways gage pathview
updated 12.1 years ago by ★ 1.6k • written 12.1 years ago by ★ 13k
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0
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3.4k
views
DESeq2 with GAGE
Pathways cycle gage DESeq2 pathview Pathways cycle gage DESeq2 pathview
12.2 years ago Luo Weijun ★ 1.6k
0
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2
replies
3.5k
views
pathview -- ID Problem?
graph pathview graph pathview
updated 12.2 years ago by ▴ 40 • written 12.2 years ago by ★ 1.6k
0
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1
reply
2.8k
views
pathview -- ID Problem?
Annotation pathview Annotation pathview
updated 12.3 years ago by ★ 1.6k • written 12.3 years ago by ★ 13k
1
vote
0
replies
2.1k
views
Pathview and GAGE now work with essentially all KEGG species
Visualization gage pathview Visualization gage pathview
12.3 years ago Luo Weijun ★ 1.6k
0
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3
replies
2.2k
views
GAGE and PATHVIEW packages
gage pathview gage pathview
updated 12.3 years ago by ★ 1.6k • written 12.3 years ago by ▴ 150
0
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1
reply
2.4k
views
pathview
Organism convert pathview Organism convert pathview
updated 12.3 years ago by ★ 1.6k • written 12.3 years ago by ▴ 70
0
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0
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2.0k
views
Pathview question
KEGGREST pathview KEGGREST pathview
12.3 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
2.5k
views
Pathview - Problem with PNG output
Pathways graph pathview Pathways graph pathview
updated 12.4 years ago by ★ 1.6k • written 12.4 years ago by ▴ 150
0
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2
replies
2.1k
views
Pathview with non-KEGG organism
Annotation pathview Annotation pathview
updated 12.4 years ago by ★ 1.6k • written 12.4 years ago by ▴ 150
0
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3
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1.8k
views
pathview puzzle
PROcess pathview PROcess pathview
updated 12.4 years ago by ★ 1.6k • written 12.4 years ago by ▴ 60
0
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0
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2.0k
views
Change enzyme code (EC) into gene symbol
Pathways graph pathview Pathways graph pathview
12.4 years ago Luo Weijun ★ 1.6k
0
votes
5
replies
2.7k
views
pathview puzzle
Pathways pathview Pathways pathview
12.4 years ago Oleg Moskvin ▴ 60
0
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4
replies
4.2k
views
Pathview for global and overview maps Re: using pathview about hsa01100
Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview
updated 12.4 years ago by ▴ 230 • written 12.4 years ago by ★ 1.6k
0
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0
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1.3k
views
pathview, when multiple entrzgene ids were mapper to the same node in kegg pathway
pathview pathview
12.5 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
3.2k
views
Pathview with non-KEGG organisms?
Microbiome Pathways GO Visualization Organism graph gage pathview Microbiome Pathways GO
12.5 years ago Luo Weijun ★ 1.6k
0
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0
replies
2.6k
views
Pathview with non-KEGG organisms?
Pathways Organism pathview Pathways Organism pathview
12.5 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
3.6k
views
Pathview+GAGE workflow on RNA-seq data pathway analysis and visualization (was: Pathview published in Bioinformatics)
Annotation Pathways Visualization graph PROcess gage pathview Annotation Pathways graph
12.5 years ago Luo Weijun ★ 1.6k
0
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0
replies
1.6k
views
Pathview published in Bioinformatics
Visualization graph pathview Visualization graph pathview
12.5 years ago km ▴ 100
0
votes
0
replies
1.5k
views
Pathview: all NA's in the mapped gene data
pathview pathview
12.5 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.1k
views
Query regarding "pathview"
pathview pathview
12.5 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.2k
views
Problem running pathview due to broken XML package
GO pathview GO pathview
12.6 years ago Luo Weijun ★ 1.6k
0
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0
replies
2.3k
views
info on pathview
graph PROcess pathview graph PROcess pathview
12.6 years ago Luo Weijun ★ 1.6k
0
votes
4
replies
1.8k
views
Pathview published in Bioinformatics
Visualization pathview Visualization pathview
12.6 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.5k
views
pathview
Pathways graph pathview Pathways graph pathview
12.6 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.3k
views
Pathview package for pathway based data integration and visualization
Visualization pathview Visualization pathview
12.8 years ago Luo Weijun ★ 1.6k
146 results • Page 3 of 3
Recent ...
Replies
Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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