Bioconductor PlotPCA

Showing : PlotPCA • reset

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plotPCA deseq2 labels

updated 7.3 years ago by Federico Marini ▴ 150 • written 7.3 years ago by al-ash ▴ 50

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3.1k

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DESeq2 plotPCA rlog transformation vsd

6.8 years ago Jane Merlevede ▴ 90

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3.1k

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plotPCA PCA

updated 13 months ago by hediatnani • 0 • written 13 months ago by Yijing • 0

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3.2k

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deseq2 rlog variancestabilizingtransformation plotpca pca

6.6 years ago lirongrossmann ▴ 80

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1.5k

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deseq2 plotPCA PCA rna-seq

8.0 years ago newsomew13 • 0

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875

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DESeq2 RNASeq plotpca

updated 3.3 years ago by Michael Love 41k • written 3.3 years ago by s1760083 • 0

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DESeq2 plotPCA

2.3 years ago • updated 2.1 years ago synat.keam • 0

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639

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plotMA ggplot2 plotPCA DESeq2

updated 7 months ago by Michael Love 41k • written 7 months ago by sara.jacobson • 0

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plotpca DESeq2

2.3 years ago bjen731 ▴ 10

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1.4k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.0 years ago elizabethe819 • 0

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368

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Rstudio plotPCA DESeq2

5 months ago yee • 0

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7.1k

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deseq2 plotpca PCa

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by lirongrossmann ▴ 80

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644

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deseq2 PlotPCA draw.triple.venn

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by N. Perera • 0

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613

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deseq2 plotpca

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by snp31 • 0

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deseq2 biplot plotpca

updated 4.3 years ago by Michael Love 41k • written 4.3 years ago by ecg1g15 ▴ 20

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pca plotpca

7.6 years ago marianarochadesouza • 0

16 results • Page 1 of 1

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Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

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Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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