Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
PlotPCA
•
reset
0
votes
2
replies
369
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
5 months ago
yee
• 0
1
vote
5
replies
640
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 7 months ago by
Michael Love
41k • written 7 months ago by
sara.jacobson
• 0
0
votes
3
replies
3.1k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 13 months ago by
hediatnani
• 0 • written 13 months ago by
Yijing
• 0
2
votes
4
replies
2.3k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
2.3 years ago • updated 2.1 years ago
synat.keam
• 0
3
votes
3
replies
6.4k
views
Adding sample label to PCA plot
plotpca
DESeq2
2.3 years ago
bjen731
▴ 10
2
votes
2
replies
1.4k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
3.0 years ago
elizabethe819
• 0
1
vote
1
reply
875
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 3.3 years ago by
Michael Love
41k • written 3.3 years ago by
s1760083
• 0
0
votes
3
replies
1.0k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 4.3 years ago by
Michael Love
41k • written 4.3 years ago by
ecg1g15
▴ 20
0
votes
1
reply
644
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
N. Perera
• 0
0
votes
1
reply
613
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
snp31
• 0
12
votes
1
reply
7.1k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
lirongrossmann
▴ 80
0
votes
6
replies
3.2k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
6.6 years ago
lirongrossmann
▴ 80
2
votes
4
replies
3.1k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
6.8 years ago
Jane Merlevede
▴ 90
14
votes
5
replies
41k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 7.3 years ago by
Federico Marini
▴ 150 • written 7.3 years ago by
al-ash
▴ 50
0
votes
0
replies
973
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
7.6 years ago
marianarochadesouza
• 0
0
votes
3
replies
1.5k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
8.0 years ago
newsomew13
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
Awards
• All
Scholar
to
ATpoint
★ 4.1k
Popular Question
to
Ben
▴ 50
Popular Question
to
Sam
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
▴ 10
Locations
• All
The city by the bay,
1 minute ago
United States,
14 minutes ago
France,
18 minutes ago
India,
27 minutes ago
United States,
44 minutes ago
Traffic: 534 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6