Showing : RCy3 • reset
3
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4
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1.4k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.0 years ago Matthew Thornton ▴ 350
3
votes
7
replies
1.2k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
12 months ago Ortega-C ▴ 10
2
votes
3
replies
1.3k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 2.5 years ago by ★ 13k • written 2.5 years ago by ▴ 50
1
vote
1
reply
616
views
how to call an app from Cytoscape using R?
RCy3
updated 16 months ago by ▴ 20 • written 16 months ago by ▴ 30
1
vote
1
reply
285
views
Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 4 months ago by ▴ 20 • written 4 months ago by ▴ 90
1
vote
1
reply
857
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 4 months ago by ▴ 20 • written 4 months ago by ▴ 90
1
vote
2
replies
883
views
RCy3 Cytoscape package question
rcy3
updated 3.4 years ago by ▴ 20 • written 4.4 years ago by ▴ 10
1
vote
3
replies
1.3k
views
loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
3.4 years ago Emilia ▴ 30
1
vote
1
reply
316
views
Cytohubba in RCY3
RCy3 Cytohubba
updated 4 months ago by ▴ 20 • written 4 months ago by ▴ 10
0
votes
1
reply
213
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
3 days ago • updated 1 day ago Matthew Thornton ▴ 350
0
votes
1
reply
748
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 3.4 years ago by ▴ 20 • written 3.8 years ago by • 0
11 results • Page 1 of 1
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Comment: error running enricher from clusterprofiler by Yael • 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Votes
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
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