Bioconductor RMySQL

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rmysql fastq seqinr ngs sangerseqr

7.4 years ago JoeMG • 0

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software error R bioconductor rmysql

7.4 years ago vivekr • 0

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ensembldb rmysql

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by Didi ▴ 10

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php javascript rmysql R Job

8.6 years ago • updated 8.4 years ago Luo Weijun ★ 1.6k

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rmysql R version 3.1.2 3.1.2 package updates

10.8 years ago milorobertsmith • 0

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Install RMySQL Windows

updated 11.0 years ago by Martin Morgan 25k • written 11.0 years ago by Panagiotis Moulos ▴ 30

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Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

Comment: voomLmFit fitted log-CPM values by Lina ▴ 10

Is the output from fitted(v) in the log2 CPM scale? or CPM scale?

Answer: voomLmFit fitted log-CPM values by Gordon Smyth 53k

Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```

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A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

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