Bioinformatics Answers

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Rhts Rhtslib

8 days ago anand_mt ▴ 80

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Rhtslib installation error zlib

updated 18 months ago by leoadam014 • 0 • written 2.5 years ago by boboshaq • 0

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428

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software error Rhtslib zlib.h

updated 18 months ago by Hervé Pagès 14k • written 18 months ago by juandenciso14 • 0

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biocLite package installation withr biocinstaller rhtslib

updated 2.6 years ago by Martin Morgan 25k • written 2.6 years ago by mmfansler ▴ 30

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598

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Rhtslib

updated 2.9 years ago by Hervé Pagès 14k • written 2.9 years ago by Aaron Lun ★ 26k

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526

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diffhic csaw Rhtslib

updated 3.5 years ago by Martin Morgan 25k • written 3.5 years ago by favorov • 0

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Rhtslib htslib package

updated 3.7 years ago by Martin Morgan 25k • written 3.7 years ago by Shian Su ▴ 40

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Answer: Differential Transcript Usage: complex factorial design by Gordon Smyth 42k

edgeR does differential expression for transcripts via the catchSalmon function followed the usual edgeR pipelines as you would do for gene…

Comment: RSamtools idxstatsBam not working with remote bam file by mja18 ▴ 30

Thanks Martin. Yes, that works.

Answer: RSamtools idxstatsBam not working with remote bam file by Martin Morgan 25k

Can you tell me if the following works for you? In a new R session ```{r} library(Rsamtools) setMethod(idxstatsBam, "BamFile", …

Comment: Aspli: error with gbCounts by achernomoretz • 0

Hi Jeremy. We got it and we are working on the issue. Thanks for your patience. A

Comment: Aspli: error with gbCounts by jbono • 0

Sorry, I forgot to respond here that I sent the file via email. Please let me know if you didn't receive it, thanks!

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Answer: RSamtools idxstatsBam not working with remote bam file

Running > 100 samples per group - memory issues

R failing to load genome files from EnsDb.Hsapiens.v86

Comment: TCGA data analysis

Comment: BSGenome Forge for non-model organism

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