Showing : Ringo • reset
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making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.1 years ago by 50k • written 8.2 years ago by • 0
2
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1
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1.2k
views
Ringo File Opening Error
Ringo
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by • 0
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4
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1.2k
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Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma ringo starr
8.7 years ago ashubiochem • 0
0
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1
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1.4k
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Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
8.8 years ago bruce.moran ▴ 30
0
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1
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1.3k
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vsn normalization in Ringo package
Normalization vsn Ringo Normalization vsn Ringo
updated 9.8 years ago by ▴ 10 • written 9.8 years ago by ★ 13k
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4
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1.6k
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Using package Ringo to analyze Agilent Chip on chip array
Ringo Ringo
12.1 years ago Gabriel Wajnberg ▴ 60
0
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0
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952
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using Ringo and ACME package for NimbleGen MeDIP-chip data
Ringo ACME Ringo ACME
13.0 years ago Adeolu Adewoye ▴ 40
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0
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991
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Normalizing together Nimblegen arrays with different designs
Normalization probe limma Ringo Normalization probe limma Ringo
13.1 years ago Wlasiuk Battagliotti, Gabriela - wlasiuk ▴ 20
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0
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1.1k
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analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
13.4 years ago Adeolu Adewoye ▴ 40
0
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1
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1.1k
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Ringo for Nimblegen ChIP-chip data in GEO
Normalization Ringo Normalization Ringo
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 190
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1.2k
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Quantile normalization in Ringo package
Ringo Ringo
updated 13.6 years ago by ▴ 450 • written 13.6 years ago by ▴ 250
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4
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1.4k
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using smoothX in Ringo
probe Ringo probe Ringo
updated 13.7 years ago by ▴ 450 • written 13.8 years ago by ▴ 50
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1
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972
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Ringo and dye swaps
Ringo Ringo
updated 13.8 years ago by ▴ 450 • written 13.8 years ago by ▴ 10
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3
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1.3k
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Error using getMeans function in Ringo/Starr
Yeast probe Ringo Yeast probe Ringo
14.0 years ago Noah Dowell ▴ 410
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2
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1.5k
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Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.1 years ago by ▴ 450 • written 14.1 years ago by ▴ 80
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2
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1.1k
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retrieveGenomicFeatureAnnotation.R file supplied with Ringo
biomaRt Ringo biomaRt Ringo
updated 14.2 years ago by ▴ 450 • written 14.2 years ago by ★ 1.3k
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1
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1.1k
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Question about RINGO and follow up analysis
Ringo Ringo
updated 14.3 years ago by ▴ 450 • written 14.3 years ago by ▴ 10
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0
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1.0k
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Ringo/Starr genomeAnno Object Tips
Annotation biomaRt Ringo Annotation biomaRt Ringo
14.4 years ago Noah Dowell ▴ 410
0
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1
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934
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Ringo/Starr getProfiles function
biomaRt Ringo Starr biomaRt Ringo Starr
updated 14.4 years ago by ★ 13k • written 14.4 years ago by ▴ 410
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4
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1.4k
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Ringo - finding enriched regions
Ringo Ringo
updated 14.6 years ago by ▴ 450 • written 14.6 years ago by ▴ 330
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0
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1.1k
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Ringo package: biological replicate correlation within cher (chip-enriched region)
Ringo Ringo
14.7 years ago Diego Villar ▴ 40
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0
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958
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Ringo package: error using computeRunningMedians function
Ringo Ringo
14.7 years ago Joern Toedling ▴ 450
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4
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1.2k
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Ringo package: error using computeRunningMedians function
Ringo Ringo
updated 14.7 years ago by ▴ 450 • written 14.7 years ago by ▴ 40
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2
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1.1k
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Problem with Ringo
Ringo Ringo
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 240
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2
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1.4k
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Advice for ChIPchip-Analysis
Ringo Ringo
14.8 years ago Karin Zimmermann ▴ 20
0
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1
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1.1k
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Missing Autocorrelation in Ringo
probe Ringo probe Ringo
updated 14.9 years ago by ▴ 450 • written 14.9 years ago by ▴ 80
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4
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1.3k
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Missing Autocorrelation in Ringo
Annotation Cancer Ringo Annotation Cancer Ringo
updated 14.9 years ago by ▴ 450 • written 14.9 years ago by ▴ 80
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2
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1.2k
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Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing Homo sapiens probe Ringo Preprocessing Homo sapiens probe Ringo
15.0 years ago JEAN-YVES SGRO ▴ 20
0
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2
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1.6k
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Ringo install fails on R 2.8.0
Ringo Ringo
updated 15.5 years ago by ▴ 140 • written 15.5 years ago by ▴ 90
0
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3
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1.2k
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Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 15.9 years ago by ▴ 730 • written 15.9 years ago by ▴ 110
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1
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971
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Error using Ringos readNimblegen
Ringo Ringo
updated 16.0 years ago by ▴ 730 • written 16.0 years ago by ▴ 10
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0
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1.2k
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Using Ringo
Normalization vsn convert Ringo Normalization vsn convert Ringo
16.8 years ago Joern Toedling ▴ 730
32 results • Page 1 of 1
Recent ...
Replies
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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