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SAM
•
reset
5
votes
8
replies
6.2k
views
Getting Aligned DNAStringSet from reference and BAM/SAM file(s)
bam
sam
alignment
biostrings
9.5 years ago
ben.ward
▴ 30
4
votes
4
replies
2.6k
views
Two-class unpaired test using LIMMA
Limma
SAM
differential expression
updated 9.7 years ago by
James W. MacDonald
66k • written 9.7 years ago by
Bade
▴ 310
0
votes
5
replies
2.4k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 12 months ago by
Yang Liao
▴ 440 • written 7.2 years ago by
courtney.stairs
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.8 years ago
Fiona
▴ 70
2
votes
2
replies
1.5k
views
SAM/siggenes: Differential gene expression analysis
SAM
siggenes
microarray
gene expression
sam
7.5 years ago
Brian Smith
▴ 120
0
votes
3
replies
1.4k
views
Implementation of SAM statistical technique in R
r
SAM
bioconductor
updated 9.5 years ago by
Simon Anders
★ 3.7k • written 9.5 years ago by
svlachavas
▴ 830
2
votes
4
replies
1.3k
views
Interprentation of appropriate statistical test
samr
SAM
siggenes
bioconductor
differential gene expression
9.5 years ago
svlachavas
▴ 830
1
vote
1
reply
1.3k
views
How to get diff expresion results from sam files
differential gene expression
sam
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
cirisarri95
• 0
0
votes
0
replies
1.2k
views
Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
6.0 years ago
ktehmsen
• 0
2
votes
2
replies
525
views
How to get the final value of the after an automatic method in SAM
microarray
SAM
updated 5.2 years ago by
James W. MacDonald
66k • written 5.2 years ago by
xgt1986627
▴ 10
10 results • Page
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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▴ 180
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42k
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Leonardo Collado Torres
★ 1.1k
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Gordon Smyth
51k
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