Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
SANTA
•
reset
1
vote
0
replies
1.6k
views
limma technical replicates and biological replicates in same design
limma
SANTA
14.7 years ago • updated 5.0 years ago
Gordon Smyth
51k
0
votes
1
reply
1.3k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
updated 5.0 years ago by
Gordon Smyth
51k • written 14.7 years ago by
Marcelo Laia
▴ 450
0
votes
0
replies
1.2k
views
FOSBE 2012
SANTA
SANTA
12.1 years ago
mabawsa
▴ 20
0
votes
5
replies
1.2k
views
Selected probes from a given probeset
Microarray
SANTA
Microarray
SANTA
12.2 years ago • updated 12.1 years ago
Ramiro Rodríguez
▴ 30
0
votes
0
replies
1.3k
views
Bioinformatics course - October 2011 Registration is now open
Microarray
Cancer
biomaRt
ArrayExpress
genomes
SANTA
Microarray
Cancer
biomaRt
genomes
12.7 years ago
Claude Chelala
▴ 40
0
votes
0
replies
1.5k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
12.8 years ago
stefano iacus
▴ 430
0
votes
1
reply
1.2k
views
question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 14.0 years ago by
Ping Ma
▴ 10 • written 14.0 years ago by
Hervé Pagès
16k
0
votes
0
replies
887
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
14.7 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
883
views
Bioconductor Digest, Vol 79, Issue 20
Annotation
limma
SANTA
Annotation
limma
SANTA
14.7 years ago
Gordon Smyth
51k
0
votes
0
replies
828
views
OFF TOPIC high-density SSU rRNA microarray
Microarray
SANTA
Microarray
SANTA
14.7 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
949
views
[limma] Possible bug on read.maimages function ?
Annotation
limma
SANTA
Annotation
limma
SANTA
14.7 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.2k
views
help needed on avereps function
Normalization
probe
limma
SANTA
Normalization
probe
limma
SANTA
updated 15.0 years ago by
Erika Melissari
▴ 250 • written 15.0 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
1.4k
views
limma Time Course Experiments question
graph
limma
SANTA
graph
limma
SANTA
15.2 years ago
Marcelo Laia
▴ 450
0
votes
5
replies
1.9k
views
Expressionset from ArrayExpress processed data
ArrayExpress
SANTA
ArrayExpress
SANTA
updated 15.4 years ago by
Martin Morgan
25k • written 15.4 years ago by
Yovanny Izquierdo Núñez
▴ 20
0
votes
0
replies
1.0k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray
Genetics
Classification
SANTA
Microarray
Genetics
Classification
SANTA
19.2 years ago
Higgs, Debi
▴ 10
0
votes
4
replies
1.3k
views
Affymetrix file parsers released under LGPL open source license
SANTA
SANTA
updated 19.5 years ago by
Harry Mangalam
▴ 60 • written 19.5 years ago by
Lelivelt, Mike
▴ 50
0
votes
1
reply
1.1k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 19.7 years ago by
Francois Collin
▴ 50 • written 19.7 years ago by
Lelivelt, Mike
▴ 50
0
votes
0
replies
982
views
Affymetrix Postdoctoral Opportunity
Microarray
SANTA
Microarray
SANTA
20.6 years ago
VanLieu, Connie
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Awards
• All
Popular Question
to
swbarnes2
★ 1.4k
Popular Question
to
Stephanie M. Gogarten
▴ 870
Popular Question
to
Jonathan
▴ 10
Popular Question
to
Frederico Moraes Ferreira
▴ 100
Popular Question
to
richardallenfriedmanbrooklyn
▴ 20
Locations
• All
United States,
40 minutes ago
France/Marseille/Inserm,
1 hour ago
The city by the bay,
4 hours ago
San Diego,
5 hours ago
Germany,
5 hours ago
Traffic: 502 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6