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limma technical replicates and biological replicates in same design
limma
SANTA
15.4 years ago • updated 5.7 years ago
Gordon Smyth
52k
0
votes
1
reply
1.4k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
updated 5.7 years ago by
Gordon Smyth
52k • written 15.4 years ago by
Marcelo Laia
▴ 450
0
votes
0
replies
1.3k
views
FOSBE 2012
SANTA
SANTA
12.8 years ago
mabawsa
▴ 20
0
votes
5
replies
1.4k
views
Selected probes from a given probeset
Microarray
SANTA
Microarray
SANTA
12.8 years ago
Ramiro Rodríguez
▴ 30
0
votes
0
replies
1.4k
views
Bioinformatics course - October 2011 Registration is now open
Microarray
Cancer
biomaRt
ArrayExpress
genomes
SANTA
Microarray
Cancer
biomaRt
genomes
13.4 years ago
Claude Chelala
▴ 40
0
votes
0
replies
1.6k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
13.5 years ago
stefano iacus
▴ 430
0
votes
1
reply
1.4k
views
question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 14.7 years ago by
Ping Ma
▴ 10 • written 14.7 years ago by
Hervé Pagès
16k
0
votes
0
replies
1.0k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
15.4 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.0k
views
Bioconductor Digest, Vol 79, Issue 20
Annotation
limma
SANTA
Annotation
limma
SANTA
15.4 years ago
Gordon Smyth
52k
0
votes
0
replies
944
views
OFF TOPIC high-density SSU rRNA microarray
Microarray
SANTA
Microarray
SANTA
15.4 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.1k
views
[limma] Possible bug on read.maimages function ?
Annotation
limma
SANTA
Annotation
limma
SANTA
15.4 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.4k
views
help needed on avereps function
Normalization
probe
limma
SANTA
Normalization
probe
limma
SANTA
updated 15.7 years ago by
Erika Melissari
▴ 250 • written 15.7 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
1.6k
views
limma Time Course Experiments question
graph
limma
SANTA
graph
limma
SANTA
15.9 years ago
Marcelo Laia
▴ 450
0
votes
5
replies
2.1k
views
Expressionset from ArrayExpress processed data
ArrayExpress
SANTA
ArrayExpress
SANTA
updated 16.1 years ago by
Martin Morgan
25k • written 16.1 years ago by
Yovanny Izquierdo Núñez
▴ 20
0
votes
0
replies
1.2k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray
Genetics
Classification
SANTA
Microarray
Genetics
Classification
SANTA
19.9 years ago
Higgs, Debi
▴ 10
0
votes
4
replies
1.5k
views
Affymetrix file parsers released under LGPL open source license
SANTA
SANTA
updated 20.2 years ago by
Harry Mangalam
▴ 60 • written 20.2 years ago by
Lelivelt, Mike
▴ 50
0
votes
1
reply
1.2k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 20.4 years ago by
Francois Collin
▴ 50 • written 20.4 years ago by
Lelivelt, Mike
▴ 50
0
votes
0
replies
1.1k
views
Affymetrix Postdoctoral Opportunity
Microarray
SANTA
Microarray
SANTA
21.2 years ago
VanLieu, Connie
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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