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limma technical replicates and biological replicates in same design
limma
SANTA
16.3 years ago • updated 6.6 years ago
Gordon Smyth
53k
0
votes
1
reply
1.5k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
updated 6.6 years ago by
Gordon Smyth
53k • written 16.3 years ago by
Marcelo Laia
▴ 450
0
votes
0
replies
1.4k
views
FOSBE 2012
SANTA
SANTA
13.7 years ago
mabawsa
▴ 20
0
votes
5
replies
1.6k
views
Selected probes from a given probeset
Microarray
SANTA
Microarray
SANTA
13.8 years ago
Ramiro Rodríguez
▴ 30
0
votes
0
replies
1.6k
views
Bioinformatics course - October 2011 Registration is now open
Microarray
Cancer
biomaRt
ArrayExpress
genomes
SANTA
Microarray
Cancer
biomaRt
genomes
14.3 years ago
Claude Chelala
▴ 40
0
votes
0
replies
1.9k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
14.4 years ago
stefano iacus
▴ 430
0
votes
1
reply
1.6k
views
question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 15.6 years ago by
Ping Ma
▴ 10 • written 15.6 years ago by
Hervé Pagès
16k
0
votes
0
replies
1.1k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
16.3 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.2k
views
Bioconductor Digest, Vol 79, Issue 20
Annotation
limma
SANTA
Annotation
limma
SANTA
16.3 years ago
Gordon Smyth
53k
0
votes
0
replies
1.1k
views
OFF TOPIC high-density SSU rRNA microarray
Microarray
SANTA
Microarray
SANTA
16.3 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.2k
views
[limma] Possible bug on read.maimages function ?
Annotation
limma
SANTA
Annotation
limma
SANTA
16.3 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.5k
views
help needed on avereps function
Normalization
probe
limma
SANTA
Normalization
probe
limma
SANTA
updated 16.6 years ago by
Erika Melissari
▴ 250 • written 16.6 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
1.7k
views
limma Time Course Experiments question
graph
limma
SANTA
graph
limma
SANTA
16.8 years ago
Marcelo Laia
▴ 450
0
votes
5
replies
2.4k
views
Expressionset from ArrayExpress processed data
ArrayExpress
SANTA
ArrayExpress
SANTA
updated 17.0 years ago by
Martin Morgan
25k • written 17.0 years ago by
Yovanny Izquierdo Núñez
▴ 20
0
votes
0
replies
1.3k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray
Genetics
Classification
SANTA
Microarray
Genetics
Classification
SANTA
20.8 years ago
Higgs, Debi
▴ 10
0
votes
4
replies
1.9k
views
Affymetrix file parsers released under LGPL open source license
SANTA
SANTA
updated 21.1 years ago by
Harry Mangalam
▴ 60 • written 21.1 years ago by
Lelivelt, Mike
▴ 50
0
votes
1
reply
1.4k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 21.3 years ago by
Francois Collin
▴ 50 • written 21.3 years ago by
Lelivelt, Mike
▴ 50
0
votes
0
replies
1.2k
views
Affymetrix Postdoctoral Opportunity
Microarray
SANTA
Microarray
SANTA
22.2 years ago
VanLieu, Connie
▴ 10
18 results • Page
1 of 1
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Replies
Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Michael Love
43k
You may want to look at the coefficients you are trying to estimate with ExploreModelMatrix: https://www.bioconductor.org/packages/relea…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
emily.wolfrum
• 0
Hi Gordon, Thanks for the quick reply. The technical or process blank samples I'm referring to are part of a set of quality control sampl…
Answer: Are individual-mouse-based statistics possible in CellChat?
by
ATpoint
★ 5.0k
Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/
Answer: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
by
ATpoint
★ 5.0k
apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Martin Morgan
25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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