Showing : SNPlocs • reset
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375
views
SNP locus package for mouse?
SNPlocs packFinder
updated 7 months ago by 67k • written 7 months ago by • 0
1
vote
3
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951
views
Using injectSNPs with a custom set of SNPs
SNPlocs BSgenome
written 13 months ago by • 0
0
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1
reply
682
views
Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
XtraSNPlocs SNPlocs
updated 22 months ago by ★ 4.5k • written 22 months ago by ▴ 20
1
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News: BSgenome package for T2T-CHM13v2.0 assembly and SNPlocs package for dbSNP155
BSgenome dbSNP T2T-CHM13v2.0 SNPlocs
2.6 years ago Hervé Pagès 16k
0
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0
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805
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how to construct a SNPlocs-class by myself
BSgenome SNPlocs
3.6 years ago Guandong Shang ▴ 40
0
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1
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1.3k
views
3.7 behaviour change with snplocs snpsById?
software error snplocs gpos
updated 6.5 years ago by 16k • written 6.5 years ago by • 0
3
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4
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1.7k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
7.7 years ago Ramiro Magno ▴ 100
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2
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1.7k
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injectSNPS only for common variants
snp snplocs
updated 8.0 years ago by ★ 3.4k • written 8.0 years ago by • 0
0
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1
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1.2k
views
SNPlocs package for dbSNP 135
Cancer SNPlocs Cancer SNPlocs
updated 9.3 years ago by • 0 • written 12.8 years ago by 16k
0
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6
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2.5k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP Cancer SNPlocs SNP Cancer SNPlocs
updated 9.4 years ago by • 0 • written 15.5 years ago by 16k
1
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6
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2.6k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
10.0 years ago garrisrg ▴ 10
0
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2
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1.8k
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using snpid2grange() and/or rsidsToGRanges() for rsid lists with missing
SNPlocs
updated 10.1 years ago by 6.7k • written 10.1 years ago by ▴ 20
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0
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1.6k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
10.5 years ago swarmqq@gmail.com ▴ 10
0
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3
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2.1k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 10.8 years ago by ▴ 20 • written 10.8 years ago by ★ 4.2k
0
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2
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1.7k
views
VCF as custom variant annotation database
Annotation SNPlocs Annotation SNPlocs
updated 10.9 years ago by ★ 6.8k • written 10.9 years ago by ▴ 380
0
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1
reply
1.6k
views
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS
updated 10.9 years ago by ▴ 280 • written 10.9 years ago by 16k
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0
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2.1k
views
Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO
11.0 years ago Hervé Pagès 16k
0
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0
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2.2k
views
BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS
11.0 years ago Hervé Pagès 16k
0
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1
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1.1k
views
custom variant AnnotationDbi?
Annotation SNPlocs Annotation SNPlocs
updated 11.1 years ago by 6.7k • written 11.1 years ago by ▴ 380
0
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2
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4.0k
views
From location to get the SNP rs ID
SNP Cancer SNPlocs ASSIGN SNP Cancer SNPlocs ASSIGN
updated 11.5 years ago by 16k • written 11.5 years ago by ▴ 970
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4
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1.9k
views
IlluminaHumanMethylation450kprobe for nearest TSS calculation question
Annotation BSgenome SNPlocs BSgenome Annotation BSgenome SNPlocs BSgenome
updated 11.7 years ago by ★ 4.2k • written 11.7 years ago by ★ 13k
0
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3
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2.0k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package Bioconductor x
SNP SNPlocs SNP SNPlocs
updated 11.9 years ago by 16k • written 11.9 years ago by ▴ 40
0
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0
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1.1k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package
SNP SNPlocs SNP SNPlocs
11.9 years ago Christina Chaivorapol ▴ 40
0
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4
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2.3k
views
predictCoding() return empty Granges
Annotation Cancer Arabidopsis thaliana BSgenome SNPlocs TranscriptDb BSgenome Annotation
updated 12.1 years ago by 16k • written 12.1 years ago by ▴ 100
0
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3
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1.6k
views
predictCoding() return empty Granges
Annotation Cancer Arabidopsis thaliana BSgenome SNPlocs TranscriptDb BSgenome Annotation
updated 12.1 years ago by 16k • written 12.1 years ago by ▴ 100
0
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4
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1.8k
views
GGtools: transScores function returning cis eQTL
SNP Annotation probe SNPlocs GGtools SNP Annotation probe SNPlocs GGtools
updated 12.1 years ago by 6.7k • written 12.1 years ago by ★ 13k
0
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0
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1.3k
views
dbSNP strand information
SNPlocs safe SNPlocs safe
12.7 years ago Alex Gutteridge ▴ 650
0
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3
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1.6k
views
Strand information for dbSNP packages
SNPlocs safe SNPlocs safe
updated 12.7 years ago by ★ 6.8k • written 12.7 years ago by ▴ 650
0
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4
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1.6k
views
Finding coding SNPs with predictCoding
SNP VariantAnnotation BSgenome SNPlocs BSgenome VariantAnnotation SNP VariantAnnotation
updated 12.7 years ago by ★ 6.8k • written 12.8 years ago by ▴ 650
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3
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2.0k
views
RE : maping SNPs
SNP Annotation Cancer SNPlocs TranscriptDb GenomicFeatures GenomicRanges SNP Annotation
updated 12.8 years ago by 16k • written 12.8 years ago by ▴ 450
0
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1
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1.2k
views
custom SNPlocs / BSgenome package
SNP Annotation Organism Homo sapiens BSgenome SNPlocs BSgenome SNP Annotation Organism
updated 13.0 years ago by 16k • written 13.0 years ago by ▴ 100
0
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1
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1.6k
views
Does liftOver work for SNPs mapping to different chr between different builds
SNP GO Cancer SNPlocs rtracklayer SNP GO Cancer SNPlocs rtracklayer
updated 13.1 years ago by ★ 11k • written 13.1 years ago by ★ 1.0k
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6
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1.6k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression SNPlocs Biostrings Regression SNPlocs Biostrings
updated 13.2 years ago by 6.7k • written 13.2 years ago by ★ 4.2k
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7
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2.0k
views
Probe ID to Sequence
SNPlocs GenomicRanges SNPlocs GenomicRanges
updated 13.3 years ago by ★ 4.2k • written 13.3 years ago by ▴ 400
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2
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1.3k
views
seqnames on dbSNP object error
SNPlocs SNPlocs
updated 13.6 years ago by 16k • written 13.6 years ago by ▴ 910
0
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2
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1.7k
views
RE : RE : maping SNPs
SNP SNPlocs TranscriptDb IRanges GenomicFeatures SNP SNPlocs TranscriptDb IRanges
updated 13.9 years ago by ★ 6.8k • written 13.9 years ago by ▴ 450
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0
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1.8k
views
RE : maping SNPs; first foundation challenge offered
SNP Annotation Cancer SNPlocs TranscriptDb biomaRt GenomicFeatures SNP Annotation Cancer
13.9 years ago Vincent J. Carey, Jr. 6.7k
0
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2
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1.5k
views
New SNPlocs data package for Human (dbSNP BUILD 131)
Cancer BSgenome SNPlocs BSgenome Cancer BSgenome SNPlocs BSgenome
14.6 years ago Hervé Pagès 16k
0
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3
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1.1k
views
Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506
SNPlocs SNPlocs
updated 14.9 years ago by ▴ 70 • written 14.9 years ago by 21k
0
votes
1
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2.9k
views
How to find SNP names
SNP Homo sapiens SNPlocs SNP Homo sapiens SNPlocs
updated 15.5 years ago by 16k • written 15.5 years ago by ▴ 90
0
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3
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1.2k
views
other human genomes, other SNP sets?
Sequencing BSgenome SNPlocs BSgenome Sequencing BSgenome SNPlocs BSgenome
15.7 years ago Paul Shannon ★ 1.1k
0
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0
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1.5k
views
About the bioconductor package SNPlocs.Hsapiens.dbSNP.20071016.
SNP Cancer SNPlocs SNP Cancer SNPlocs
15.8 years ago Hervé Pagès 16k
0
votes
4
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2.7k
views
how to modify a Biostrings object
SNPlocs SNPlocs
updated 15.8 years ago by 16k • written 15.8 years ago by ★ 1.1k
43 results • Page 1 of 1
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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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