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Segmentation
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
22 months ago
raven1306
• 0
0
votes
1
reply
826
views
PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN
CNV
CNA
segmentation
calculateTangentNormal
updated 4.5 years ago by
markus.riester
▴ 130 • written 4.5 years ago by
sruddy17
• 0
0
votes
0
replies
837
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
5.4 years ago
jlarsen728
• 0
1
vote
5
replies
1.2k
views
CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
5.9 years ago
Jenny.chien
• 0
0
votes
3
replies
1.6k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA
Cancer
dnacopy
segmentation
updated 7.0 years ago by
markus.riester
▴ 130 • written 7.0 years ago by
Luisa672
• 0
1
vote
2
replies
1.4k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy
segmentation
CBS
updated 7.3 years ago by
Venkat Seshan
▴ 30 • written 7.4 years ago by
W. C.
▴ 10
0
votes
2
replies
1.2k
views
GCRMA segmentation fault
gcrma
segmentation
fault
segfault
updated 8.2 years ago by
James W. MacDonald
66k • written 8.2 years ago by
kazi
• 0
7 results • Page
1 of 1
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Comment: Trouble reading samplesheet in with diffbind to create dba
by
Mallory
• 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba
by
Anthony
• 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Votes
Answer: How to do DESeq2 on Kallisto Data
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
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