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Segmentation
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
2.5 years ago
raven1306
• 0
0
votes
1
reply
1.0k
views
PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN
CNV
CNA
segmentation
calculateTangentNormal
updated 5.2 years ago by
markus.riester
▴ 130 • written 5.2 years ago by
sruddy17
• 0
0
votes
0
replies
990
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
6.1 years ago
jlarsen728
• 0
1
vote
5
replies
1.5k
views
CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
6.5 years ago
Jenny.chien
• 0
0
votes
3
replies
1.9k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA
Cancer
dnacopy
segmentation
updated 7.6 years ago by
markus.riester
▴ 130 • written 7.6 years ago by
Luisa672
• 0
1
vote
2
replies
1.6k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy
segmentation
CBS
updated 8.0 years ago by
Venkat Seshan
▴ 30 • written 8.0 years ago by
W. C.
▴ 10
0
votes
2
replies
1.4k
views
GCRMA segmentation fault
gcrma
segmentation
fault
segfault
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
kazi
• 0
7 results • Page
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Answer: How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differenti
by
James W. MacDonald
68k
The short answer is yes. When you compute pseudo-bulk estimates, the counts/gene are expected to be somewhat proportional to the number of …
Comment: displaying the differential expression with deseq2 over 4X2 samples with the in
by
Leonard
• 0
Visualize subject contributions to overall differential expression using: Volcano plots/scatter plots (subject-colored). Heatmaps (subject…
Comment: Plot title for PCA in DESeq2
by
AL
• 0
Thank you!
Answer: Interpreting DESEQ2 interaction term and inclusion of covariate
by
swbarnes2
★ 1.4k
"ecotypehigh.rearing_high" will basically do a 4 group comparison, and tell you if any genes that change going from high to low change diff…
Comment: error in ChAMP loading file
by
Ashley
• 0
This error in ChAMP loading file and the solutions provided here are good and there are people who need these solutions. To get the [Rockin…
Votes
Interpreting DESEQ2 interaction term and inclusion of covariate
A: Seurat/DESeq2 - single cell RNA-seq differential expression
Answer: Plot title for PCA in DESeq2
A: DESeq2: detect significantly increasing across an ordinal variable
Answer: DEseq2 design for additive treatment
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