Showing : Segmentation • reset
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM Segmentation CINdex VCF Data
3.3 years ago raven1306 • 0
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PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN CNV CNA segmentation calculateTangentNormal
updated 6.0 years ago by ▴ 130 • written 6.0 years ago by • 0
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Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation reference CNA TCGA
6.9 years ago jlarsen728 • 0
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CRImage createTrainingSet package is not available to install
classification segmentation cell types image analysis crimage
7.3 years ago Jenny.chien • 0
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Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA Cancer dnacopy segmentation
updated 8.4 years ago by ▴ 130 • written 8.4 years ago by • 0
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DNAcopy segmentation issue: min.width argument not working?
dnacopy segmentation CBS
updated 8.8 years ago by ▴ 30 • written 8.8 years ago by ▴ 10
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GCRMA segmentation fault
gcrma segmentation fault segfault
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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