Showing : Segmentation • reset
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM Segmentation CINdex VCF Data
2.4 years ago raven1306 • 0
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1
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977
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PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN CNV CNA segmentation calculateTangentNormal
updated 5.0 years ago by ▴ 130 • written 5.0 years ago by • 0
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952
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Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation reference CNA TCGA
5.9 years ago jlarsen728 • 0
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5
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1.4k
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CRImage createTrainingSet package is not available to install
classification segmentation cell types image analysis crimage
6.4 years ago Jenny.chien • 0
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3
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1.8k
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Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA Cancer dnacopy segmentation
updated 7.5 years ago by ▴ 130 • written 7.5 years ago by • 0
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1.5k
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DNAcopy segmentation issue: min.width argument not working?
dnacopy segmentation CBS
updated 7.9 years ago by ▴ 30 • written 7.9 years ago by ▴ 10
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2
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1.4k
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GCRMA segmentation fault
gcrma segmentation fault segfault
updated 8.7 years ago by 67k • written 8.7 years ago by • 0
7 results • Page 1 of 1
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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Votes
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
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