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Select
•
reset
3
votes
6
replies
1.6k
views
error using org.Hs.eg.db package : Error in get(load(file)) :
org.hs.eg.db
select
9.1 years ago
tina.khajeh
• 0
8
votes
4
replies
6.6k
views
Error UseMethod ("select_"): from bioconductor dplyr select package
bioconductor
dplyr
select
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
abedini.jaleh
▴ 10
0
votes
3
replies
1.3k
views
Select function not working in R; how to correct custom select
Select
Annotation Dbi
Custom
updated 4.5 years ago by
James W. MacDonald
66k • written 4.5 years ago by
ekl
• 0
1
vote
3
replies
1.1k
views
AnnotationDBI Select with incomplete keys tags
annotationdbi
select
8.2 years ago • updated 8.1 years ago
Rockbar
• 0
0
votes
3
replies
1.5k
views
Select in UniProt.ws not working?
uniprot.ws
select
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
sarah.sandmann
• 0
1
vote
3
replies
1.4k
views
Very slow select to extract data from UniProt.ws object
uniprot.ws
select
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
alxcho
▴ 10
1
vote
2
replies
11k
views
select() gene in db not working although key exists
annotationdbi
org.mm.eg.db
org.dm.eg.db
select
9.1 years ago
Patrick Schorderet
▴ 20
5
votes
2
replies
5.5k
views
org.Hs.eg.db - convert ALIAS to ENTREZID, GENENAME
org.hs.eg.db
select
8.7 years ago
Brian Smith
▴ 120
4
votes
2
replies
3.4k
views
select keys from org.Mm.eg.db
org.mm.eg.db
select
list
updated 8.7 years ago by
James W. MacDonald
66k • written 8.7 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.0k
views
What is the name of this probe?
affymetrix microarrays
hta20transcriptcluster
r
select
updated 5.4 years ago by
James W. MacDonald
66k • written 5.4 years ago by
Pindre
• 0
10 results • Page
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Comment: Slightly different count plots from R and spreadsheet
by
Michael Love
42k
Change timepoint to an integer in the data frame: ``` as.numeric(as.character( <factor> )) ``` Then it should make points instead of boxe…
Answer: WGNCA kME vs. kIM
by
Vitor
• 0
You can compare kIM and kME within module assignments. The plot below is for my network (I used Pearson correlation and signed network). …
Comment: ChAMP installation issue
by
James W. MacDonald
66k
If you have beta values, try the `DSS` package. An alternative is to compute the logit transform (to M-values), which are amenable to analy…
Answer: pathview error
by
James W. MacDonald
66k
The obvious would be to check that you have genes that map to that pathway. It's unusual to have so many NA values for your NCBI gene IDs, …
Comment: ChAMP installation issue
by
Tahirah
• 0
Thanks a lot. But unfortunately it didn't work. I guess I will have to wait until ChAMP becomes available for version 3.19 In the meantime …
Votes
Including squared covariates to account for non-linear dependencies in differential gene expression analysis
DESeq2 DE gene expression of scRNA-seq pseudobulk
Answer: Multiple factor DSEq2 result generates weird volcano plot
DESeq2 for single cell pseudobulk processing
Simultaneously adding two different covariates in the model gives error in DESeq2.
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