Showing : Sequencing • reset
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Bioinformatics Position in Oncology / Multiple Myeloma, Univ. Heidelberg
Sequencing Cancer Sequencing Cancer
12.1 years ago Wolfgang Huber ★ 13k
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1.7k
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Regarding multiple hits of same read
Sequencing Sequencing
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ▴ 170
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Bioconductor/R workshop for high-throughput data analysis (web version)
Sequencing Microarray Sequencing Microarray
12.1 years ago gregory voisin ▴ 430
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Which package I should use
Sequencing Category Sequencing Category
updated 12.1 years ago by ▴ 30 • written 12.1 years ago by ▴ 10
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2.1k
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EasyRNAseq - error in building count table - Error in unlist
Sequencing RNASeq edgeR easyRNASeq Sequencing RNASeq edgeR easyRNASeq
updated 12.1 years ago by ★ 1.2k • written 12.1 years ago by ★ 13k
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Differential Expressed Genes analysis regarding limited genes
Sequencing Normalization GO DESeq Sequencing Normalization GO DESeq
12.1 years ago Michael Love 43k
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1
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Differential Expressed Genes analysis regarding limited genes
Sequencing DESeq Sequencing DESeq
updated 12.1 years ago by 43k • written 12.1 years ago by ▴ 10
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1
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1.5k
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Rsubread for paired end SOLID sequencing
Sequencing Alignment convert Rsubread Sequencing Alignment convert Rsubread
updated 12.1 years ago by ★ 3.6k • written 12.1 years ago by ▴ 50
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Job in GWAS / Next Gen Sequencing / genetics
Sequencing Genetics Sequencing Genetics
12.2 years ago Paul Leo ▴ 970
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5
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2.0k
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Finding my un-counted reads
Sequencing rtracklayer ShortRead GenomicRanges Sequencing rtracklayer ShortRead
updated 12.2 years ago by ★ 6.8k • written 12.2 years ago by ▴ 300
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1
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1.4k
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EdgeR: sRNA analysis check
Sequencing edgeR Sequencing edgeR
updated 12.2 years ago by 53k • written 12.2 years ago by ▴ 30
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3
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3.9k
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mirDeep2 edgeR analysis
Sequencing miRNA microRNA Sequencing miRNA microRNA
updated 12.2 years ago by ★ 7.9k • written 12.2 years ago by ▴ 10
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MEDIPS no longer producing AMS values
Sequencing MEDIPS Sequencing MEDIPS
updated 12.2 years ago by ▴ 570 • written 12.2 years ago by ▴ 40
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3
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Diffbind: Binding Affinity Heatmap
Sequencing GO Clustering GLAD edgeR DESeq DiffBind Sequencing GO Clustering GLAD edgeR
12.2 years ago Rory Stark ★ 5.2k
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3
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1.6k
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Rsubread for paired end SOLID sequencing
Sequencing Rsubread Sequencing Rsubread
updated 12.2 years ago by ★ 3.6k • written 12.2 years ago by ▴ 50
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14
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4.5k
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Trimming of partial adaptor sequences
Sequencing Cancer Biostrings Sequencing Cancer Biostrings
12.3 years ago Taylor, Sean D ▴ 250
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2.5k
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featureCounts read summarization function
Sequencing Annotation Rsubread Sequencing Annotation Rsubread
12.3 years ago Wei Shi ★ 3.6k
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Job opening: Staff Scientist – Computational Biology and Bioinformatics – Massachusetts General Hospital & Harvard Medical School
Sequencing Microarray Cancer Sequencing Microarray Cancer
12.3 years ago Wittner, Ben ▴ 290
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2.9k
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Create consensus fasta file from indexed Bam file
Sequencing Sequencing
updated 12.3 years ago by 16k • written 12.3 years ago by ★ 13k
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1
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2.0k
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CIGAR and seq lengths differ after trimming
Sequencing convert Sequencing convert
updated 12.4 years ago by 25k • written 12.4 years ago by ▴ 300
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Reminder: Practical Workshop on High-Throughput Sequencing Data Analysis. 30 Sep - 4 Oct 2013, OIST, Okinawa, Japan
Sequencing Sequencing
12.4 years ago Kathi Zarnack ▴ 110
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RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq edgeR Rsubread Sequencing RNASeq edgeR Rsubread
12.4 years ago Gordon Smyth 53k
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900
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Chip-seq pipeline and cloud ami questions
Sequencing Microarray edgeR Sequencing Microarray edgeR
12.4 years ago Christopher Howerton ▴ 40
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1.1k
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Genentech Bioinformatics is seeking R programming contractors
Sequencing Sequencing
12.4 years ago Michael Lawrence ★ 11k
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17
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3.7k
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[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 330
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Bioinformatics Job at University of Münster
Sequencing Sequencing
12.4 years ago Hans-Ulrich Klein ▴ 330
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1.9k
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Job opening, KCL Breakthrough Breast Cancer Research Unit
Sequencing Network Cancer Breast Sequencing Network Cancer Breast
12.5 years ago Lawler, Katherine ▴ 40
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2
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2.1k
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cn.mops: copy number for low-coverage bam files?
Sequencing Coverage cn.mops Sequencing Coverage cn.mops
updated 12.5 years ago by ▴ 540 • written 12.5 years ago by ▴ 750
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Postdoc RNA-Interactome at EMBL
Sequencing Sequencing
12.5 years ago Wolfgang Huber ★ 13k
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2.1k
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need help for the study design of a RNA-Seq project
SNP Sequencing SNP Sequencing
12.5 years ago shirley zhang ★ 1.0k
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REDseq_question
Sequencing Genetics BSgenome BSgenome REDseq Sequencing Genetics BSgenome BSgenome REDseq
12.5 years ago Julie Zhu ★ 4.3k
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1.4k
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MEDIPS
Sequencing Alignment MEDIPS Sequencing Alignment MEDIPS
updated 12.6 years ago by ▴ 570 • written 12.6 years ago by ▴ 350
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1
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3.0k
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Large logCPM values when using offsets in edgeR for normalization
Sequencing edgeR cqn EDASeq Sequencing edgeR cqn EDASeq
updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 90
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CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
12.6 years ago CAMDA 2013 ▴ 30
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1
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1.7k
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col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 10
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I was wondering if anyone here was using SPP?
Sequencing Sequencing
12.6 years ago Matthew Thornton ▴ 380
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5
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edgeR for data combined from different studies and/or platforms
Sequencing Cancer edgeR Sequencing Cancer edgeR
updated 12.6 years ago by ★ 7.9k • written 12.6 years ago by ★ 13k
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JOB: 3 year post for Postdoctoral Research Scientist in Statistical Functional Genomics at University of Oxford
Sequencing Genetics Sequencing Genetics
12.6 years ago Peter Humburg ▴ 30
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1.0k
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Practical Workshop on High-Throughput Sequencing Data Analysis. 30 Sep - 4 Oct 2013, OIST, Okinawa, Japan
Sequencing Sequencing
12.6 years ago Kathi Zarnack ▴ 110
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0
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897
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Reminder - VIB Nucleomics Core - User Meeting 2013
Sequencing Microarray Sequencing Microarray
12.7 years ago Rudy van Eijsden ▴ 40
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1
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1.5k
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Student Internships at Illumina Cambridge Ltd.
Sequencing Sequencing
12.7 years ago Adrian Alexa ▴ 400
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2
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2.4k
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bsseq and BSmooth with RRBS
Sequencing bsseq Sequencing bsseq
updated 12.7 years ago by ★ 6.5k • written 12.7 years ago by ▴ 650
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1.9k
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Job openings at Barts Cancer Institute, QMUL: Postdoctoral Research assistant and Bioinformatician
Sequencing Cancer Breast Sequencing Cancer Breast
12.7 years ago Claude Chelala ▴ 40
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1.7k
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[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
12.7 years ago stefano iacus ▴ 430
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PhD student in Quantitative Genetic Models of Complex Traits
Sequencing Genetics Drosophila melanogaster Sequencing Genetics Drosophila melanogaster
12.7 years ago Peter Sørensen (HAG) ▴ 60
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1
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1.9k
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Can we use DNAcopy to analyse Copy Number Viaration using next generation sequencing data generated by eigher Ion PGM or Illumina MiSeq
Sequencing DNAcopy Sequencing DNAcopy
updated 12.8 years ago by ▴ 210 • written 12.8 years ago by ★ 13k
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0
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930
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Computer for the analysis of high-throughput genomic data
Sequencing Microarray GO Network Cancer Sequencing Microarray GO Network Cancer
12.8 years ago Steve Lianoglou ★ 13k
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1
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1.8k
views
Minimal input data format for bsseq
Sequencing Alignment bsseq Sequencing Alignment bsseq
updated 12.8 years ago by ★ 6.5k • written 12.8 years ago by ▴ 20
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Fwd: ExomeCopy package error
Sequencing exomeCopy Sequencing exomeCopy
12.8 years ago love ▴ 150
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1.4k
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ExomeCopy package error
Sequencing exomeCopy Sequencing exomeCopy
12.8 years ago Guest User ★ 13k
308 results • Page 3 of 7
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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