Showing : Sequencing • reset
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Job: Bioinformatics Scientist, Astex Pharmaceuticals
bioinformatician job oncology sequencing drug development Job
10.4 years ago Harpreet Saini ▴ 30
1
vote
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replies
1.6k
views
Genome editing analysis with Illumina sequencing
indel sequencing alignment
10.5 years ago Merienne Nicolas ▴ 120
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1.3k
views
Invitation Research Collaborations
cancer microarray mirna sequencing
10.5 years ago alexandru.floares • 0
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1.9k
views
Job: Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job sequencing methylation expression Job
10.7 years ago Andy Lynch ▴ 120
3
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3
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4.6k
views
Clarrification of ReadDNAStringSet
sequencing
10.8 years ago khouloud.madbouh • 0
6
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1
reply
3.4k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 10.8 years ago by ▴ 370 • written 11.9 years ago by ▴ 160
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Job: Computational Biologist Research Associate Position at the University of Cambridge
cancer sequencing prostate Job
11.0 years ago Andy Lynch ▴ 120
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3
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1.2k
views
How does shearwater determine the reference sequence?
sequencing
11.1 years ago • updated 11.0 years ago Asma rabe ▴ 290
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1
reply
6.8k
views
Missing SAM header?
sequencing
updated 11.0 years ago by 68k • written 11.0 years ago by ▴ 80
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9
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3.1k
views
MEDIPS: how does MEDIPS define a methylated region / cluster?
Sequencing MEDIPS
updated 11.1 years ago by • 0 • written 11.1 years ago by ★ 13k
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3
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1.6k
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VariantTools, Shearwater and reference genome
sequencing
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 290
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4
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2.0k
views
segfault for pairwiseAlignment
sequencing software error alignment
updated 11.1 years ago by ★ 6.5k • written 11.1 years ago by ▴ 10
1
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0
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1.7k
views
Job: PI position at EMBL-EBI (Cambridge UK)
Job Sequencing
11.1 years ago Wolfgang Huber ★ 13k
2
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2.6k
views
Job: Job Opening: Computational Biologist @ Genentech Bioinformatics
Job Sequencing Genetics Cancer
updated 11.1 years ago by ★ 8.2k • written 11.1 years ago by ★ 11k
1
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2
replies
3.4k
views
Interaction categorical/continuous variable DESeq2
Sequencing DESeq2
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ▴ 80
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2.5k
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Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Sequencing Annotation
11.1 years ago Wei Shi ★ 3.6k
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3
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1.8k
views
edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Sequencing Alignment GO edgeR DESeq2
updated 11.1 years ago by ★ 7.9k • written 11.1 years ago by ▴ 60
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0
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1.5k
views
edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Sequencing Alignment GO edgeR DESeq2 Sequencing Alignment GO edgeR DESeq2
11.1 years ago Gordon Smyth 53k
0
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1
reply
1.3k
views
edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Sequencing edgeR DESeq2 Sequencing edgeR DESeq2
updated 11.2 years ago by ★ 7.9k • written 11.2 years ago by ▴ 320
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3
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2.1k
views
edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Sequencing Sequencing
updated 11.2 years ago by ★ 7.9k • written 11.2 years ago by ▴ 60
2
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5
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2.1k
views
DEXSeq update results change
Sequencing DESeq DEXSeq Sequencing DESeq DEXSeq
11.2 years ago António Miguel de Jesus Domingues ▴ 510
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3
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2.0k
views
finding differential expression pattern between paired columns of data frame.
Sequencing SmallRNA Microarray limma Sequencing SmallRNA Microarray limma
updated 11.2 years ago by 68k • written 11.2 years ago by ▴ 70
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1
reply
2.3k
views
edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates?
Sequencing edgeR MEDIPS Sequencing edgeR MEDIPS
11.2 years ago Vang Le ▴ 80
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1
reply
1.2k
views
Designing a model with blocking and other interactions
Sequencing Sequencing
updated 11.3 years ago by 53k • written 11.3 years ago by ▴ 110
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1
reply
1.6k
views
DESeqs two-factor two-level, interaction is interested
Sequencing GO phyloseq DESeq2 Sequencing GO phyloseq DESeq2
11.3 years ago Shucong Li ▴ 60
1
vote
2
replies
2.4k
views
DESeqs two-factor two-level, interaction is interested
Sequencing GO phyloseq DESeq2 Sequencing GO phyloseq DESeq2
updated 11.3 years ago by 43k • written 11.3 years ago by ▴ 60
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4.6k
views
cpm cutoff (edgeR) [was: total count filter cutoff (edgeR)]
Sequencing miRNA edgeR Sequencing miRNA edgeR
11.3 years ago Gordon Smyth 53k
0
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0
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1.1k
views
Practical Workshop on High-Throughput Sequencing Data Analysis. 6-10 Oct 2014, OIST, Okinawa, Japan
Sequencing Sequencing
11.4 years ago Gabriella Rustici ▴ 60
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1.3k
views
ECCB 2014
Sequencing Pathways Sequencing Pathways
11.4 years ago Wolfgang Raffelsberger ▴ 60
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2
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3.3k
views
DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 11.4 years ago by 68k • written 11.4 years ago by ▴ 10
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1
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4.2k
views
ChIPseeker: Error in annotatePeak
Sequencing GO annotate ChIPseeker Sequencing GO annotate ChIPseeker
11.5 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
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1.9k
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Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing Epigenetics PROcess Sequencing Epigenetics PROcess
11.5 years ago Brian Herb ▴ 80
0
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0
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4.5k
views
Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
11.5 years ago Dan Tenenbaum ★ 8.2k
0
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1
reply
1.3k
views
CNV detection using cn.farms for non-affymetrix arrays (custom oligonucleotide arrays)
Sequencing Microarray probe cn.mops Sequencing Microarray probe cn.mops
updated 11.5 years ago by ▴ 210 • written 11.5 years ago by ★ 13k
0
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0
replies
1.0k
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Announcement: (Free) Course 29-30 May, HPC Wales: Parallel Computing with R using SPRINT on post-genomic data
Sequencing Sequencing
11.5 years ago SPRINT ▴ 20
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8
replies
2.1k
views
Designing a model with blocking and other interactions
Sequencing Sequencing
updated 11.6 years ago by 53k • written 11.6 years ago by ▴ 110
0
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0
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744
views
Join expression values of replicas in edgeR
Sequencing RNASeq edgeR Sequencing RNASeq edgeR
11.6 years ago Gordon Smyth 53k
0
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0
replies
1.4k
views
Statistical Bioinformatician/Geneticist in Oxford
Sequencing Genetics Sequencing Genetics
11.6 years ago Steve Taylor ▴ 280
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0
replies
1.3k
views
CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
Sequencing Annotation Classification Clustering Sequencing Annotation Classification
11.6 years ago Wolfgang Huber ★ 13k
0
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0
replies
1.7k
views
Student Internships at Illumina Cambridge Ltd, UK
Sequencing BaseSpaceR Sequencing BaseSpaceR
11.7 years ago Adrian Alexa ▴ 400
0
votes
8
replies
3.0k
views
DEXSeq - too many exons in gene
Sequencing Annotation DEXSeq Sequencing Annotation DEXSeq
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ▴ 510
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3
replies
1.2k
views
(EdgeR) statistical justification of partitioning dataset for multiple analysis
Sequencing edgeR Sequencing edgeR
updated 11.7 years ago by ★ 7.9k • written 11.7 years ago by ▴ 90
0
votes
7
replies
3.4k
views
[ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default
Sequencing ReportingTools DESeq2 Sequencing ReportingTools DESeq2
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 30
0
votes
4
replies
1.6k
views
finding a very large number of false positives using edgeR
Sequencing RNASeq edgeR Sequencing RNASeq edgeR
updated 11.8 years ago by 53k • written 11.8 years ago by ▴ 20
0
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0
replies
1.5k
views
Job opening: Staff Scientist – Computational Biology and Bioinformatics – Massachusetts General Hospital, Boston, MA, USA
Sequencing Microarray Cancer Sequencing Microarray Cancer
11.8 years ago Wittner, Ben ▴ 290
0
votes
0
replies
1.9k
views
Job: Postdoc positions - Computational Biology - Center for Genomic Science, Milan, Italy
Sequencing Cancer Sequencing Cancer
11.9 years ago mattia pelizzola ▴ 200
5
votes
2
replies
3.5k
views
Gviz - show plus and minus strand from a bam
Sequencing Coverage Gviz Sequencing Coverage Gviz
updated 11.9 years ago by ★ 1.6k • written 11.9 years ago by ▴ 510
0
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0
replies
1.4k
views
Job in statistical genetics / bioinformatics
Sequencing Genetics Sequencing Genetics
11.9 years ago Paul Leo ▴ 970
0
votes
2
replies
7.2k
views
how to obtain base counts from BAM file at specific genomic coordinates
SNP Sequencing Coverage Alignment Cancer Biostrings PROcess IRanges GenomicRanges SNP
updated 12.0 years ago by ★ 11k • written 12.0 years ago by 16k
0
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0
replies
4.6k
views
Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
12.0 years ago Dan Tenenbaum ★ 8.2k
308 results • Page 2 of 7
Recent ...
Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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