Showing : Sequencing • reset
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pileupAsGRanges depth limit
Sequencing ggbio Sequencing ggbio
updated 12.9 years ago by 25k • written 12.9 years ago by ★ 1.1k
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Job postings - computational biologists in translational science
Sequencing Cancer Sequencing Cancer
12.9 years ago Crispin Miller ★ 1.1k
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Graphic tracks UCSC genome browser
Sequencing Sequencing
updated 12.9 years ago by ★ 11k • written 12.9 years ago by ▴ 90
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How to design matrix on edgeR to study genotype x environmental interaction
Sequencing miRNA Normalization edgeR Sequencing miRNA Normalization edgeR
13.0 years ago • updated 12.9 years ago Gordon Smyth 53k
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How to design matrix on edgeR to study genotype x environmental interaction
Sequencing miRNA edgeR Sequencing miRNA edgeR
13.0 years ago Danie ▴ 40
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Bioinformatics job posting
Sequencing Cancer Sequencing Cancer
13.0 years ago Yinyin Yuan ▴ 10
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How to design matrix on edgeR to study genotype x environmental interaction
Sequencing edgeR Sequencing edgeR
13.0 years ago Gordon Smyth 53k
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840
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How to design matrix on edgeR to study genotype x environmental interaction
Sequencing edgeR Sequencing edgeR
13.0 years ago Danie ▴ 40
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EdgeR GOF non-linear
Sequencing graph edgeR Sequencing graph edgeR
updated 13.0 years ago by 53k • written 13.0 years ago by ▴ 20
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Postdoc in Statistical Bioinformatics, Zurich, Switzerland
Sequencing ASSET Sequencing ASSET
13.0 years ago Mark Robinson ▴ 880
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trimTails function in ShortRead package give different results on the same input
Sequencing ShortRead Sequencing ShortRead
updated 13.0 years ago by 25k • written 13.0 years ago by ▴ 10
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Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
13.1 years ago Dan Tenenbaum ★ 8.2k
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Bioconductor Digest, Vol 115, Issue 22
Transcription Sequencing miRNA SmallRNA Annotation Normalization GO Cancer Organism edgeR
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 10
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Is normalization in edgeR required for small RNA sequencing data?
Sequencing SmallRNA edgeR Sequencing SmallRNA edgeR
updated 13.1 years ago by ▴ 880 • written 13.1 years ago by ▴ 40
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Open-rank faculty position, Dept of Biostatistics, Virginia Commonwealth University
Sequencing Cancer Sequencing Cancer
13.1 years ago Kellie J. Archer, Ph.D. ▴ 120
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New positions at Novartis
Sequencing Sequencing
13.1 years ago Kauffmann, Audrey ▴ 60
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Job: Research Associate in Bioinformatics, Cambridge, UK
Sequencing genomes Sequencing genomes
13.2 years ago Krys Kelly ▴ 270
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4 Positions at EMBL
Sequencing Network Sequencing Network
13.2 years ago Wolfgang Huber ★ 13k
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Job openings: Staff Scientist – Computational Biology and Bioinformatics – Massachusetts General Hospital
Sequencing Microarray Cancer Sequencing Microarray Cancer
13.2 years ago Wittner, Ben ▴ 290
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Package announcement: bsseq
Sequencing Alignment Cancer Colon bsseq Sequencing Alignment Cancer Colon bsseq
13.2 years ago Kasper Daniel Hansen ★ 6.5k
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Post-Doc - Milan: miRNAs and non-coding RNAs identification from RNAseq data
Sequencing RNASeq miRNA Cancer Sequencing RNASeq miRNA Cancer
13.2 years ago mattia pelizzola ▴ 200
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minor allele frequency comparison from two softwares based on the same sequencing data
SNP Sequencing SNP Sequencing
13.3 years ago Jiafen ▴ 10
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Illumnia Filtering
Sequencing PROcess Sequencing PROcess
13.3 years ago Fatemehsadat Seyednasrollah ▴ 260
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Differential gene expression: EdgeR / DESeq and identifying noise/outliers
Sequencing edgeR DESeq Sequencing edgeR DESeq
13.3 years ago Gordon Smyth 53k
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Differential gene expression: EdgeR / DESeq and identifying noise/outliers
Sequencing edgeR DESeq Sequencing edgeR DESeq
13.3 years ago Michael Salbaum ▴ 80
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Biostring: print sequence alignment to file
Sequencing Alignment Cancer Biostrings Sequencing Alignment Cancer Biostrings
updated 13.3 years ago by 16k • written 13.4 years ago by ▴ 100
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Job posting: Computational Biologists/Bioinformaticians, University of Cambridge, UK
Sequencing Sequencing
13.5 years ago Krys Kelly ▴ 270
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Postdoctoral position available at Stellenbosch University
Sequencing Genetics Pharmacogenomics Sequencing Genetics Pharmacogenomics
13.5 years ago Warnich, Louise <lw@sun.ac.za> ▴ 10
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Job offer: Postdoc Comp. Biol. of RNA-protein interactions, data analysis of MS and HTS at EMBL Heidelberg
Sequencing Sequencing
13.5 years ago Wolfgang Huber ★ 13k
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Bioconductor 2.10 is released
Transcription Sequencing Microarray Annotation Normalization Visualization Network Bayesian
13.6 years ago Dan Tenenbaum ★ 8.2k
0
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DESeq estimateDispersion options for lower depth miRNA-seq
Sequencing miRNA DESeq Sequencing miRNA DESeq
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 50
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Please help: SNP Frequency Analysis Package in Bioconductor
Sequencing Sequencing
updated 13.6 years ago by 6.7k • written 13.6 years ago by ▴ 200
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SNP Frequency Analysis Package in Bioconductor
Sequencing Sequencing
13.6 years ago Javerjung Sandhu ▴ 200
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Job Announcement: Genome Informatics
Sequencing Genetics genomes Sequencing Genetics genomes
13.6 years ago Jenny Drnevich ★ 2.0k
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Checking RNAseq DESeq pipeline
Sequencing PROcess DESeq Sequencing PROcess DESeq
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 280
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homopolymer gap extension penalty in Biostrings
Sequencing Alignment GO Cancer Sequencing Alignment GO Cancer
updated 13.6 years ago by ▴ 10 • written 13.6 years ago by 16k
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easyRNASeq error
Sequencing Alignment Annotation Organism BSgenome biomaRt BSgenome easyRNASeq Sequencing
13.6 years ago delhomme@embl.de ★ 1.2k
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Volcano plot
Sequencing DESeq Sequencing DESeq
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 30
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Job openings: Staff Scientist - Computational Biology and Bioinformatics - Massachusetts General Hospital
Sequencing Cancer Sequencing Cancer
13.7 years ago Wittner, Ben ▴ 290
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7.1k
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gplots Heatmap
SNP Transcription Sequencing RNASeq miRNA Microarray Annotation Normalization GO Cancer
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 10
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DeSeq vs current version of Cuffdiff
Sequencing Bayesian Cancer DESeq Sequencing Bayesian Cancer DESeq
updated 13.7 years ago by ▴ 290 • written 13.7 years ago by ★ 2.0k
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Postdoctoral position at Novartis, Basel
Sequencing Microarray Sequencing Microarray
13.8 years ago Kauffmann, Audrey ▴ 60
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1.6k
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Caught segfault when running MEDIPS package
Sequencing MEDIPS Sequencing MEDIPS
updated 13.8 years ago by ▴ 40 • written 13.8 years ago by ★ 13k
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Announcement: NCI Second Symposium on Translational Genomics
Sequencing Cancer Sequencing Cancer
13.8 years ago Sean Davis 21k
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GenomeGraphs plots: polygon tracks for sequencing coverage data
Sequencing Coverage Visualization GenomeGraphs Sequencing Coverage Visualization
13.9 years ago Samuel Wuest ▴ 330
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[Job] Bioinformatician-NGS (Vienna, Austria)
Sequencing Infrastructure Sequencing Infrastructure
13.9 years ago Ido M. Tamir ▴ 150
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1
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1.2k
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Maximal length of Rle vectors
Sequencing Sequencing
updated 13.9 years ago by 16k • written 13.9 years ago by ▴ 330
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4
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8.7k
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DESeq adjusted pvalue calculation / filtering data
Sequencing Organism qvalue DESeq Sequencing Organism qvalue DESeq
updated 13.9 years ago by ★ 6.0k • written 13.9 years ago by ▴ 20
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Bioinformatics/biostatistics position at the Institute of Cancer Research, UK
Sequencing Microarray Genetics Cancer Sequencing Microarray Genetics Cancer
14.0 years ago Daniel Brewer ★ 1.9k
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1.5k
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Bioconductor 2.9 is released
Transcription Sequencing miRNA qPCR Proteomics Annotation Normalization Visualization cdf
14.0 years ago Dan Tenenbaum ★ 8.2k
308 results • Page 4 of 7
Recent ...
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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