Bioconductor TCGA

Showing : TCGA • reset

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2.9k

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illimina 450k methylation qsea MEDIPS TCGA

updated 4 months ago by Matthias Lienhard ▴ 240 • written 7.1 years ago by justinburgener ▴ 20

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531

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recount3 TCGA RNASeq

updated 5 months ago by Leonardo Collado Torres ★ 1.0k • written 6 months ago by tangming2005 ▴ 190

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1.0k

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DESeq2 recount GTEx TCGA recount3

updated 12 months ago by ATpoint ★ 4.1k • written 12 months ago by David ▴ 20

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494

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BatchEffect TCGA WGCNA

updated 10 months ago by ATpoint ★ 4.1k • written 10 months ago by khaserdene99 • 0

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504

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TCGA GenomicDataCommons GDC

written 10 months ago by António Miguel de Jesus Domingues ▴ 510

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171

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TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data

9 weeks ago BioinfoMug • 0

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226

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TCGAbiolinks TCGA clinical TCGA-BRCA

written 7 weeks ago by BioinfoMug • 0

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GDCRNATools TCGA

7 days ago glaciya2018 • 0

8 results • Page 1 of 1

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Answer: DESeq2 v1.35.0 by Michael Love 41k

That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k

Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.

Answer: DESeq2 v1.35.0 by James W. MacDonald 65k

Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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